PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009108127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 45832.4 Da PI: 8.3669 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.4e-07 | 84 | 107 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+ lC+ffa G C Gd+C F+H+ XP_009108127.1 84 KRILCKFFAH-GACLKGDNCEFSHD 107 889***6666.*************5 PP | |||||||
2 | zf-CCCH | 23.7 | 8.7e-08 | 115 | 135 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ XP_009108127.1 115 VCTFYQR-GLCSYGSRCRYEHV 135 5999999.***********997 PP | |||||||
3 | zf-CCCH | 22.3 | 2.3e-07 | 187 | 210 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ +a+ G C++Gd+C+ +Hg XP_009108127.1 187 DQPICS-YAAAGDCPRGDQCPHIHG 210 578999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 80 | 109 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.187 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 82 | 108 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-8 | 84 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.399 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 112 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-4 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 115 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-5 | 115 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 185 | 212 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0017 | 186 | 211 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-4 | 187 | 210 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.6E-9 | 237 | 313 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.53E-13 | 244 | 318 | No hit | No description |
CDD | cd00162 | 2.69E-4 | 253 | 313 | No hit | No description |
PROSITE profile | PS50089 | 12.238 | 254 | 312 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 5.3E-7 | 254 | 311 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 8.6E-7 | 254 | 311 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 278 | 287 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.103 | 341 | 370 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.54 | 341 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MISIRAFNDN QIRTQVRRRI SVRWGIRLHN LLLCPSLEEE KNAELLRRLV ITGLNRFLGA 60 QFLGKPISGT VVPPRSPSIS PMSKRILCKF FAHGACLKGD NCEFSHDWKD PTNNVCTFYQ 120 RGLCSYGSRC RYEHVKLKPH PSPASSSSAL PRSSASEKDL SPLPSSPAWT LDSSDNTFSS 180 SSSKPQDQPI CSYAAAGDCP RGDQCPHIHG DLCPTCGKRC LHPFRPEERE EHKRSCEKKQ 240 KQLEALKLSQ EVECCVCLER VLSKPTPAER KFGLLTECDH AFCIGCIRNW RSSSPSTGMD 300 VNSTLRACPI CRKLSYFVVP SVIWFSAPEE KKEIMDNYRD KLRSIDCKHF NFGDGNCPFG 360 TSCFYKHAFH DGRLEEVVLR HLDAEDGQTV IAKDIRLSDF LEGMRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009108127.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189271 | 1e-173 | AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009108127.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like | ||||
Swissprot | E0X9N4 | 0.0 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A3P6BBY7 | 0.0 | A0A3P6BBY7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FBE9 | 0.0 | M4FBE9_BRARP; Uncharacterized protein | ||||
STRING | Bra038415.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-153 | C3H family protein |
Publications ? help Back to Top | |||
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