PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108126.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 442aa    MW: 49890.8 Da    PI: 7.9202
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.3e-0784107226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k+ lC+ffa  G C  Gd+C F+H+
  XP_009108126.1  84 KRILCKFFAH-GACLKGDNCEFSHD 107
                     889***6666.*************5 PP
2zf-CCCH23.59.6e-08115135526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C f++r G C+yG+rC++ H+
  XP_009108126.1 115 VCTFYQR-GLCSYGSRCRYEHV 135
                     5999999.***********997 PP
3zf-CCCH22.22.5e-07187210226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+ +a+ G C++Gd+C+ +Hg
  XP_009108126.1 187 DQPICS-YAAAGDCPRGDQCPHIHG 210
                     578999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-580109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.18782109IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-582108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-884107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399110137IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4112136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4115134IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5115135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535185212IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017186211IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4187210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.8E-9237313IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.01E-13244318No hitNo description
CDDcd001621.61E-4253313No hitNo description
PROSITE profilePS5008912.238254312IPR001841Zinc finger, RING-type
PfamPF000979.8E-7254311IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001845.3E-7254311IPR001841Zinc finger, RING-type
PROSITE patternPS005180278287IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.197341370IPR000571Zinc finger, CCCH-type
SMARTSM003560.16341369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MISIRAFNDN QIRTQVRRRI SVRWGIRLHN LLLCPSLEEE KNAELLRRLV ITGLNRFLGA  60
QFLGKPISGT VVPPRSPSIS PMSKRILCKF FAHGACLKGD NCEFSHDWKD PTNNVCTFYQ  120
RGLCSYGSRC RYEHVKLKPH PSPASSSSAL PRSSASEKDL SPLPSSPAWT LDSSDNTFSS  180
SSSKPQDQPI CSYAAAGDCP RGDQCPHIHG DLCPTCGKRC LHPFRPEERE EHKRSCEKKQ  240
KQLEALKLSQ EVECCVCLER VLSKPTPAER KFGLLTECDH AFCIGCIRNW RSSSPSTGMD  300
VNSTLRACPI CRKLSYFVVP SVIWFSAPEE KKEIMDNYRD KLRSIDCKHF NFGDGNCPFG  360
TSCFYKHTVK PGSYAWKYHR PPPRRPSPSG SNLSDMDTFF SMMGGIMSEG EYDPFAFEDS  420
DDDELTTTDM MMLLMNLDME SD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108126.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108127.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N41e-172C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLM4FBE90.0M4FBE9_BRARP; Uncharacterized protein
STRINGBra038415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-133C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]