PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107934.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 547aa    MW: 60968.8 Da    PI: 4.4054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.11.5e-48131392128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +pGfrFhPtdeelv++yLk+k+ ++kl++ ++i  vd+yk++P++Lp +  +k+++++w++F++r++ky++  r+ r t++gyWkatgkd+ +  
  XP_009107934.1  13 APGFRFHPTDEELVMYYLKRKICKRKLRV-NAIGVVDVYKLDPEELPgQsVLKTGDRQWFYFTPRSRKYPNAARSGRCTATGYWKATGKDRVISY 106
                     69***************************.89**************96347788999************************************99 PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vglkktLvfy+grap+g++tdWvmhey++
  XP_009107934.1 107 -NSRSVGLKKTLVFYRGRAPNGQRTDWVMHEYTM 139
                     .999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.86112162IPR003441NAC domain
SuperFamilySSF1019411.57E-5413162IPR003441NAC domain
PfamPF023653.2E-2514138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MADSCLRGGK FSAPGFRFHP TDEELVMYYL KRKICKRKLR VNAIGVVDVY KLDPEELPGQ  60
SVLKTGDRQW FYFTPRSRKY PNAARSGRCT ATGYWKATGK DRVISYNSRS VGLKKTLVFY  120
RGRAPNGQRT DWVMHEYTMD EDELGRCKNA KEYYALYKLF KKSGAGPKNG EEYGAPFQEE  180
EWADDDDNDN GDDIDVPVVR CEDNVSLFEP VNVRLHDLEE ILSGIPFAPG VPQTFTSVPQ  240
VNREEELQST LVNNSATEFL KPQETGDFLP NDMPSSYESI DVTSAPNNSV LVFEKEDYIE  300
MDDFLTPEHV ASSVENPAQL LNPGEYGDFN DFDQLFHDVS MSLDMEPILQ GTSADPLSSF  360
ADNTSDQEHP FPYQQFQDQT PENKLNNIMD PSPNLNQFSD DLWLEDDNQA FLFDQPQSVI  420
SGAFASPSSG VGPGSTNLVN GEDQEGVNGG GGTSPFSSAL WAFMDSIPST PASACEGPIN  480
RTFVRMSSFT RIKFSGIANG TPVTTTVMAK KRSRNRWFLL LSIVGALCAI FWVLMATVQA  540
SGRPVFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-431413917140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138RKICKRKL
2510515KRSRNR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.136950.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107934.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325130.0AC232513.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065E07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107934.10.0PREDICTED: NAC domain-containing protein 17-like
SwissprotQ9XIC50.0NAC17_ARATH; NAC domain-containing protein 17
TrEMBLM4F6N40.0M4F6N4_BRARP; Uncharacterized protein
STRINGBra036744.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.10.0NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]