PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107820.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 442aa    MW: 48476.9 Da    PI: 8.3007
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06117138426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + Cr++   G C++Gd+C++ H+
  XP_009107820.1 117 KVCRYWVD-GSCSHGDKCRYLHC 138
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8034268IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-44267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-6113137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333113140IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4115139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5117135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.8E-43136433IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-5144183IPR001680WD40 repeat
SuperFamilySSF509781.25E-43145437IPR017986WD40-repeat-containing domain
PfamPF004006.0E-4147183IPR001680WD40 repeat
PROSITE profilePS5008213.516151192IPR001680WD40 repeat
PROSITE profilePS5029418.721151353IPR017986WD40-repeat-containing domain
PRINTSPR003202.2E-6170184IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780170184IPR019775WD40 repeat, conserved site
SMARTSM0032095223260IPR001680WD40 repeat
SMARTSM003200.033267304IPR001680WD40 repeat
PfamPF004000.062271304IPR001680WD40 repeat
PROSITE profilePS5008211.277274313IPR001680WD40 repeat
PRINTSPR003202.2E-6291305IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4307344IPR001680WD40 repeat
PfamPF004000.0047309343IPR001680WD40 repeat
PRINTSPR003202.2E-6331345IPR020472G-protein beta WD-40 repeat
SMARTSM0032026348391IPR001680WD40 repeat
SMARTSM003203.4394431IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAKFEKERAR QIQKAYGFRF ERRQQASLRP TRRVDRPAAA KGSRQEVCSY WRAGRCNRNP  60
CQFLHRELPG PGYSNKRVAD ESGFAGPSHR RGPGFNGNSS NNWGRLGGNR TVTKTEKVCR  120
YWVDGSCSHG DKCRYLHCWS IGDSFSLLTQ LDGHEKLVTG IALPSGSDKL YTASKDETIR  180
LWDCASGQCT SVLNLGAEVG CVISEGPWLL VGMPNLVKAW NIETNADQSL SGPIGQVYSL  240
VVGTDLHFAG TQDGSILAWR YSAATNCFEP AASLTGHTLG VVTLYVGANR LYSGSMDKSI  300
KVWSLDNLQC IQTLTDHTSV VMSLICWDQF LLSCSLDNTV KIWAAVEGGN LEVTYTHKEE  360
HGVLALCGVH DAEAKPVLLC SCNDSALRLY DLPSFTERGK IFAKQEIRSI QIGPGGIFFT  420
GDGTGQVKVW KWSTAPTTAA MS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-181304378323Tako8
6g6n_A3e-181304378323Tako8
6g6n_B3e-181304378323Tako8
6g6n_C3e-181304378323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.26690.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509750.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like, partial
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLM4EHM40.0M4EHM4_BRARP; Uncharacterized protein
STRINGBra028289.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein