PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107740.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19497.1 Da    PI: 10.4345
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.8e-17957151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien    qvtfskRrn ++KKA+ELS LC+++  vi+fs+t k+y +ss
  XP_009107740.1  9 KKIENVNSPQVTFSKRRNRLIKKANELSFLCEVD--VIVFSNTVKVYYFSS 57
                    689****************************766..699********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.553159IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-23158IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-19259IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-13323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-161055IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-132338IPR002100Transcription factor, MADS-box
PfamPF020964.9E-766158IPR001708Membrane insertase OXA1/ALB3/YidC
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051205Biological Processprotein insertion into membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGRGKIEIKK IENVNSPQVT FSKRRNRLIK KANELSFLCE VDVIVFSNTV KVYYFSSGRH  60
GVTSFTPLKG LIIQGPIFIS FFFAIRNMAE KVPSFKTGGT LWFTDLTTAD TTYILPLLTA  120
ITFIIMVESN MQEGMEGNPV AGTMKKFSRI IAFLSIPILM GIEKVTITLP LFTI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.231613e-38flower| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. May participate in the activity and assembly of cytochrome oxidase (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509174.11e-115PREDICTED: mitochondrial inner membrane protein OXA1-like
SwissprotQ9SKD37e-58OXA1L_ARATH; Mitochondrial inner membrane protein OXA1-like
TrEMBLM4FGX01e-113M4FGX0_BRARP; Uncharacterized protein
STRINGBra040348.1-P1e-114(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.13e-22AGAMOUS-like 18
Publications ? help Back to Top
  1. Moore M,Harrison MS,Peterson EC,Henry R
    Chloroplast Oxa1p homolog albino3 is required for post-translational integration of the light harvesting chlorophyll-binding protein into thylakoid membranes.
    J. Biol. Chem., 2000. 275(3): p. 1529-32
    [PMID:10636840]
  2. Sakamoto W,Spielewoy N,Bonnard G,Murata M,Wintz H
    Mitochondrial localization of AtOXA1, an arabidopsis homologue of yeast Oxa1p involved in the insertion and assembly of protein complexes in mitochondrial inner membrane.
    Plant Cell Physiol., 2000. 41(10): p. 1157-63
    [PMID:11148275]