PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107568.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 211aa    MW: 23834.1 Da    PI: 8.4093
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-1124576095
                    EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 60 vltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     lt+GWkeF++a++L+ gD+v+Fkl+g++ f  +v+
  XP_009107568.1 24 RLTRGWKEFAEAHDLRIGDIVIFKLKGSMVF--HVT 57
                    49***********************998888..665 PP
2B357.82e-1898193299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fk++++ ++ +++ l lp   +  + ++ke+ k+ +l + +g+ W+v ++++ ++g y+++ GW++F+ +n+   gD++vF ++g+ ++ +++ v
  XP_009107568.1  98 FKAEVTDSNVREDKLNLPVGATGCNALNKEC-KKAKLVNIEGKAWNVSMRFNESGGFYYIK-GWRKFCAENKCHIGDSFVFNVVGDGNTLPLMCV 190
                     78999999999999*******9888999877.6*****************99999999998.***********************9877799988 PP

                     E-S CS
              B3  97 frk 99 
                     ++ 
  XP_009107568.1 191 CSP 193
                     875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.871162IPR003340B3 DNA binding domain
SMARTSM010191362IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-132368IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-92459No hitNo description
Gene3DG3DSA:2.40.330.101.7E-152471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-1596187IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.43597194IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-1697185IPR015300DNA-binding pseudobarrel domain
CDDcd100176.85E-1497185No hitNo description
PfamPF023622.1E-1698192IPR003340B3 DNA binding domain
SMARTSM010192.5E-1598194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MNIKRRQTNP TPKLPWQVIQ EERRLTRGWK EFAEAHDLRI GDIVIFKLKG SMVFHVTPFG  60
PSCCDIQYTY PNSMEEAHDH QNNTGTGARF SYSWDYCFKA EVTDSNVRED KLNLPVGATG  120
CNALNKECKK AKLVNIEGKA WNVSMRFNES GGFYYIKGWR KFCAENKCHI GDSFVFNVVG  180
DGNTLPLMCV CSPSKECLKS AGDIASSSRV N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107568.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895991e-167AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107568.11e-160PREDICTED: B3 domain-containing protein REM9-like
TrEMBLM4F5X71e-142M4F5X7_BRARP; Uncharacterized protein
STRINGBra036483.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16565313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-40B3 family protein