PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009107299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 192aa MW: 21624.4 Da PI: 4.8811 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.6 | 6.9e-11 | 31 | 120 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kv +ps ++ +++p +f+ + g ++ + t+t++++ g + ++ + ++++++++ +G +eF++a+ + eg f+ F +g+s+f +v+ XP_009107299.1 31 FIKVILPSTIKEK--MMIPARFV-RLG--PKLTDTVTIQTPVGFKRSIGI--KRTGNEVWVDNGCSEFAEAHSISEGHFLYFCSEGNSSF--RVM 116 6777766655555..8*******.565..44777****************..*******************************9898999..999 PP EE-S CS B3 96 vfrk 99 +f+ XP_009107299.1 117 IFDV 120 9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-16 | 25 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-15 | 27 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.50E-12 | 29 | 119 | No hit | No description |
Pfam | PF02362 | 1.7E-8 | 31 | 119 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-10 | 31 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MNTTRRASAR ITSAASQRRQ KPEPEPAVKK FIKVILPSTI KEKMMIPARF VRLGPKLTDT 60 VTIQTPVGFK RSIGIKRTGN EVWVDNGCSE FAEAHSISEG HFLYFCSEGN SSFRVMIFDV 120 SASEIDYPMD KVHVIESDDD EVMEVMDTDD GEGFTRVDSS DNDSSDEEAI DLEKLLKKKP 180 RVNVKFETIN ID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009107299.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107299.1 | 1e-140 | PREDICTED: B3 domain-containing protein At1g49475 isoform X2 | ||||
Swissprot | Q9XIB4 | 6e-75 | Y1475_ARATH; B3 domain-containing protein At1g49475 | ||||
TrEMBL | A0A397YCF4 | 1e-136 | A0A397YCF4_BRACM; Uncharacterized protein | ||||
STRING | Bra014191.1-P | 1e-128 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 7e-58 | B3 family protein |
Publications ? help Back to Top | |||
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