PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009106932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 251aa MW: 27533.9 Da PI: 9.8763 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.4 | 3.6e-31 | 141 | 197 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+ R++Rakle+++kl +ksrkpylheSRh hAl+R+RgsgGrF XP_009106932.1 141 NEPIFVNAKQYHAILRHRKHRAKLEAQNKL-IKSRKPYLHESRHLHALKRARGSGGRF 197 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.6E-35 | 139 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.416 | 140 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.8E-26 | 142 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.5E-22 | 143 | 165 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.5E-22 | 174 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MQVFQRKDSM PKNPNIQGSL SFSLTKDMMM MSTQSGLQLQ DQNSSSTQSS GESGGGGEAA 60 SFVEHNRYGC SSIVNTNLPD SVFPLPTSDL ASWPPPCPET PHFNGFLAPE YASQPTALSS 120 HLEMMGLASS RVPLPHNIQE NEPIFVNAKQ YHAILRHRKH RAKLEAQNKL IKSRKPYLHE 180 SRHLHALKRA RGSGGRFLNT KKLQEPSNSL CGGGNINGSS SSSDHNMFQN TPFRFSGYPS 240 THHVSALMSG T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-20 | 141 | 206 | 2 | 67 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.24156 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant, except roots. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009106932.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF386957 | 1e-121 | AF386957.1 Arabidopsis thaliana Unknown protein (F15I1.26) mRNA, complete cds. | |||
GenBank | AY081445 | 1e-121 | AY081445.1 Arabidopsis thaliana unknown protein (At1g54160) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106932.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1 | ||||
Refseq | XP_009106933.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1 | ||||
Swissprot | Q9SYH4 | 1e-120 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | M4EQ28 | 0.0 | M4EQ28_BRARP; Uncharacterized protein | ||||
STRING | Bra030899.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11633 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-105 | nuclear factor Y, subunit A5 |