PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106692.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 308aa    MW: 35067.8 Da    PI: 8.6666
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-1549108155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++GV++++++gr++A+++d  s+n    k+ ++++lg ++ +e Aa+a++ a++k++g
  XP_009106692.1  49 SSHRGVTRHRWTGRYEAHLWDkNSWNEtqtKKgRQVYLGAYDEEEAAARAYDLAALKYWG 108
                     579******************888877878557*************************98 PP
2AP2544.1e-17151202155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  XP_009106692.1 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 202
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-1250108IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1650118IPR016177DNA-binding domain
SMARTSM003805.7E-2750122IPR001471AP2/ERF domain
PROSITE profilePS5103220.3550116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1551117IPR001471AP2/ERF domain
PRINTSPR003672.3E-55162IPR001471AP2/ERF domain
PfamPF008471.5E-12151202IPR001471AP2/ERF domain
CDDcd000186.98E-25151212No hitNo description
SuperFamilySSF541714.77E-18151212IPR016177DNA-binding domain
PROSITE profilePS5103218.874152210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-18152211IPR001471AP2/ERF domain
SMARTSM003803.4E-26152216IPR001471AP2/ERF domain
PRINTSPR003672.3E-5192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAKLSQRNKK IIEDQTIDKT ATASASPVVF KCKRKRKSPP QNAPPQRSSS HRGVTRHRWT  60
GRYEAHLWDK NSWNETQTKK GRQVYLGAYD EEEAAARAYD LAALKYWGRD TLLNFPLSTY  120
EEDVKEMESH SKEEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL  180
GTYATQEEAA RAYDIAAIEY RGLNAVTNFD VSRYLDLPAT KKPNAAASPE SPNDQTSSDD  240
NNFTKTEVIT EPSTPPEAIQ SRRSFPDDIQ TYFECQDSGK LATEEDVIFG GFNSFISPGL  300
CNEFDYWS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.265371e-100flower
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527860.0AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106692.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotA0JPZ81e-141AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLM4F2400.0M4F240_BRARP; Uncharacterized protein
STRINGBra035137.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-148AP2 family protein