PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106684.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 261aa MW: 29804.8 Da PI: 10.0672

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.3	4.4e-16	124	213	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lp++f+ +h + + ++tl de+ + k+ +k++ l++GW++F+ +++L +gD vvF+l++ ++f + XP_009106684.1 124 FIKPMLQSHVTGGFWLGLPRQFCHTHlpK----YDEMITLVDENEDESVTKYLADKNG----LSGGWRGFAIDHQLVDGDAVVFHLINPTTF--K 208 89*******************999443....3458****9999999777777....**********************986777..8 PP EEEE- CS B3 94 vkvfr 98 v ++r XP_009106684.1 209 VYIIR 213 88877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.2E-20	115	214	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.67E-25	117	215	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.56E-25	122	213	No hit	No description
SMART	SM01019	3.2E-22	124	215	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.856	124	215	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.1E-14	124	213	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MVESEYEQIR LKRVEENKKR MIELNLNKLS QSLRLSSPSP KPSPAKARTP RTPVDSSEVR 60 RSSRAKNPPP SYKEFGLEPL DRPRRSYQRR DLLNRVYASD DARVYAIERA EALQSSLEPE 120 FPSFIKPMLQ SHVTGGFWLG LPRQFCHTHL PKYDEMITLV DENEDESVTK YLADKNGLSG 180 GWRGFAIDHQ LVDGDAVVFH LINPTTFKVY IIRVNDESSN GLGGSNGKEL VIKSNKNQEE 240 KKVSEVHPLS NSGKRKRRGR M

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106684.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189312	1e-113	AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106684.1	0.0	PREDICTED: B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	1e-119	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	M4F232	0.0	M4F232_BRARP; Uncharacterized protein
STRING	Bra035129.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-108	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]