PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009105941.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 296aa MW: 32524.7 Da PI: 7.8743

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.3	1.3e-11	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT +E+e l +++++G+g Wk I r ++R+ ++k++w+++ XP_009105941.1 5 KLKWTGDEEEALRAGIEKHGPGKWKNILRDPEfahqlTNRSNIDLKDKWRNL 56 689***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.818	1	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-15	3	63	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-13	4	57	IPR009057	Homeodomain-like
Pfam	PF00249	4.9E-7	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	1.46E-20	7	57	No hit	No description
SuperFamily	SSF46785	5.44E-13	125	203	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	1.7E-14	126	191	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	3.0E-10	127	197	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	22.192	128	196	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	9.5E-8	130	187	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGNQKLKWTG DEEEALRAGI EKHGPGKWKN ILRDPEFAHQ LTNRSNIDLK DKWRNLCVAP 60 GTQCSNDKSR TRKVKEEGVT LASLSPTAAT ATPPSYPNSS SSSPATSLPR SASSDFSVDN 120 NFAVDNKNAP RYDAMIFEAI SELADPNGSD VGSIFSFIEP RHEVPPTFRR VLSSRLRRLA 180 AQGKLSKLLN FYKLPDGSET TTRTTPAPTP KPKETNVKPR QSYINQPPSV SQEMIDEAAI 240 TAACKVVEAE NKINVAKAAV EELEKTTKLA DETELMLELA KEMHKECCRG EAVVLA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.8516	0.0	flower\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00231	DAP	Transfer from AT1G72740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105941.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189507	1e-168	AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBank	AC189607	1e-168	AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105941.1	0.0	PREDICTED: telomere repeat-binding factor 4 isoform X2
Refseq	XP_013649581.1	0.0	telomere repeat-binding factor 4-like isoform X2
Swissprot	F4IEY4	1e-111	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A397YV68	0.0	A0A397YV68_BRACM; Uncharacterized protein
STRING	Bo6g116150.1	1e-169	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	5e-95	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]