PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009105865.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 356aa MW: 37206.3 Da PI: 7.4347

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124	1.7e-38	38	118	4	83
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s + ++ XP_009105865.1 38 VKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNASLRGGGG 118 5899***************************************************************88843333322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.489	42	96	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.4E-34	42	127	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
METRTAEEAS LQLNSTENPS PGGGSVPSTA LAVVKSAVKK PSKDRHTKVD GRGRRIRMPA 60 VCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIATTGTG TIPANFSTLN ASLRGGGGGG 120 STVFAQSSKS SSLPMSFQGS GMSLYDDSNG ANGSSSSVVV DHSRKLLNGG VFGFHHPPIM 180 SAERNPYRED YFKESEVPSG SSQKPGQFQD QELGPGPGMG RGTPTASVVP QPMWAVAPGS 240 TNGGSAFWML PMSGSGGREQ MQQQQPGHQM WAFNPGSYPV GTGRVVTAAP MGSMMLGGQQ 300 LGLGVAEGNM AAALRGGRGG DGLGMTLEQH QHQHHQQHQE PNNQGEASEN GGDDKK

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

METRTAEEAS LQLNSTENPS PGGGSVPSTA LAVVKSAVKK PSKDRHTKVD GRGRRIRMPA  60
VCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIATTGTG TIPANFSTLN ASLRGGGGGG  120
STVFAQSSKS SSLPMSFQGS GMSLYDDSNG ANGSSSSVVV DHSRKLLNGG VFGFHHPPIM  180
SAERNPYRED YFKESEVPSG SSQKPGQFQD QELGPGPGMG RGTPTASVVP QPMWAVAPGS  240
TNGGSAFWML PMSGSGGREQ MQQQQPGHQM WAFNPGSYPV GTGRVVTAAP MGSMMLGGQQ  300
LGLGVAEGNM AAALRGGRGG DGLGMTLEQH QHQHHQQHQE PNNQGEASEN GGDDKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.14656	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105865.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105865.1	0.0	PREDICTED: transcription factor TCP22-like
Swissprot	Q9C7G4	1e-160	TCP22_ARATH; Transcription factor TCP22
TrEMBL	M4DHW3	0.0	M4DHW3_BRARP; Uncharacterized protein
STRING	Bra016090.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	1e-94	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Dong H, et al. Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis. Genes Dev., 2017. 31(2): p. 197-208 [PMID:28167503]