PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 213aa MW: 24187.4 Da PI: 8.0235 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 42 | 1.5e-13 | 127 | 151 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+y d C+FaHg XP_009105600.1 127 KTELCNKWQETGTCPYADHCQFAHG 151 9***********************8 PP | |||||||
2 | zf-CCCH | 19.4 | 1.9e-06 | 164 | 189 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ XP_009105600.1 164 YKTEVCRMVLAGDVCSYGHRCHFRHS 189 9**********55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-17 | 120 | 158 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-10 | 122 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-8 | 125 | 152 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.934 | 125 | 153 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-10 | 127 | 151 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-12 | 159 | 192 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-9 | 159 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MENEIAPFTY SGSSAGMMNS HGESSGGVVA PSRSRSVMQQ RRQDMVNREA LCYTRLHEAS 60 LEAEVLRLEN TELRSLNLHL KKELDQLIRS SLHLSLGLQK VYVRGGKKEE EEEEEIEVEV 120 YNQGMTKTEL CNKWQETGTC PYADHCQFAH GIKELRPVIR HPRYKTEVCR MVLAGDVCSY 180 GHRCHFRHSL SDQAKLTAAG CKSNNKSSFK LVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-20 | 127 | 192 | 5 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.20419 | 1e-132 | bud| flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189489 | 1e-129 | AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018508455.1 | 9e-83 | PREDICTED: zinc finger CCCH domain-containing protein 15-like | ||||
Swissprot | Q9C9F5 | 5e-61 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | M4CIL1 | 7e-76 | M4CIL1_BRARP; Uncharacterized protein | ||||
STRING | Bra004045.1-P | 1e-76 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7287 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 1e-61 | C3H family protein |