PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105381.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 37134.9 Da PI: 5.485 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.4 | 1.9e-08 | 20 | 126 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 tde +++ yL+ ++ + ee++++ d+++ +P++ +ae+ + f +r ++ r+n ++ W+ g+dk ++++ + k XP_009105381.1 20 TDEKMMSIYLQSINDNGESWPEEFMEDRDVFTKNPSEVF---EAENPFVVFVYPRTEAC---GRTNGCGSD-GWRIIGHDKLIKHE-----DTGK 102 89**********999998666689**************5...33434445555555544...478886554.5**********993.....3469 PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 +L f +++ +g k +Wvm++yrl XP_009105381.1 103 ILKFCGETKARGYKRTWVMQQYRL 126 *****99***************98 PP | |||||||
2 | NAM | 29.3 | 2.5e-09 | 201 | 302 | 33 | 128 |
NAM 33 vikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy........kgrapkge 117 + + d+y+v+P++L + +++ + + F++r ++ +sg+W+ +d++++s ++e++g k+++ fy + + + + XP_009105381.1 201 CYVTNDVYRVHPSTLVdHeDKRSTASGLCVFANRTEACG--YT--DGCESGRWRIVEEDNAIFSMSHEVMGYKRVFKFYeedkgryfDIVDGEQV 291 456679*********732233334457799999888764..33..33579*****************************5553332212233345 PP NAM 118 ktdWvmheyrl 128 +W+m+eyrl XP_009105381.1 292 LRTWIMEEYRL 302 678******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.043 | 11 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-16 | 20 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.329 | 169 | 318 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-20 | 185 | 316 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-4 | 231 | 302 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEEIRAAKYP DVKDDHSKAT DEKMMSIYLQ SINDNGESWP EEFMEDRDVF TKNPSEVFEA 60 ENPFVVFVYP RTEACGRTNG CGSDGWRIIG HDKLIKHEDT GKILKFCGET KARGYKRTWV 120 MQQYRLPSKW SPKQDHVVCK IQLLFQTEIS FLLAKHFTYS ADPLPATQSL TAYGIRLANQ 180 QDDGAYYLQV IFDSGGNEWP CYVTNDVYRV HPSTLVDHED KRSTASGLCV FANRTEACGY 240 TDGCESGRWR IVEEDNAIFS MSHEVMGYKR VFKFYEEDKG RYFDIVDGEQ VLRTWIMEEY 300 RLVEDAMKDK VLCVIKRGRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105381.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105381.1 | 0.0 | PREDICTED: uncharacterized protein LOC103831246 | ||||
TrEMBL | M4ERU1 | 0.0 | M4ERU1_BRARP; Uncharacterized protein | ||||
STRING | Bra031518.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60280.1 | 1e-109 | NAC domain containing protein 23 |