PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105366.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 309aa    MW: 34374.6 Da    PI: 8.2104
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.33.4e-15223247226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tGtC+yGd C+FaHg
  XP_009105366.1 223 KTELCNKWQETGTCPYGDHCQFAHG 247
                     9***********************8 PP
2zf-CCCH21.34.8e-07260285126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte Cr  +++ +C+yG rC+F H+
  XP_009105366.1 260 YKTEVCRMVLAGDICPYGHRCHFRHS 285
                     9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-18216254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-11218253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23221249IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9221248IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-12223247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9255290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-13255288IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5259286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272259287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MENETAPFSY SGTSAVGIVN SHGEPSQLYH SSRSVMQQRQ DMVNREALCY TRLHEASLEA  60
EVLRLENTEL RSMNLHLKKE LDQLIRSSIQ NRFGYDRVPF RMLSNLSIGG GNNRGAEDAE  120
NQNRAVNRDD VSDESPTSVI ASEDLNRSSL PKSISVRSSG YSKSSQGVCG GAAAQCGKPR  180
GAVAKPGACG QQLSTTQRVY VRGGKKEEEE EIEVEVYNQG MTKTELCNKW QETGTCPYGD  240
HCQFAHGIKE LRPVIRHPRY KTEVCRMVLA GDICPYGHRC HFRHSLSEQE KLMAAGCKPN  300
NKSSFKLVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22223288570Butyrate response factor 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.204190.0bud| flower| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894890.0AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105366.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_018508330.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-151C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3P6BWL40.0A0A3P6BWL4_BRACM; Uncharacterized protein
TrEMBLM4CJA40.0M4CJA4_BRARP; Uncharacterized protein
STRINGBra004288.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-152C3H family protein