PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105004.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 289aa    MW: 31974.9 Da    PI: 6.5853
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32147204259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  XP_009105004.1 147 EDGYRWRKYGQKAVKNSSFPRSYYRCTNSRCTVKKRVERSSEDPSIVITTYEGQHCHQ 204
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33131205IPR003657WRKY domain
SuperFamilySSF1182905.36E-28138204IPR003657WRKY domain
PROSITE profilePS5081128.575141206IPR003657WRKY domain
SMARTSM007746.1E-38146205IPR003657WRKY domain
PfamPF031061.0E-25147204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNDPKDPDLS DDSAWRELTA SDSDFFYRDT STILSEFAWN LHASSSFTQT AGVPSSITTT  60
TSKTDQPIPT SSGSSSAAAS VTVTEVSTNI NNPSTATSSS SEDPTESSTA SAAKTPETPK  120
KEKKKAQKQI RQQRFAFMTK SDVDNLEDGY RWRKYGQKAV KNSSFPRSYY RCTNSRCTVK  180
KRVERSSEDP SIVITTYEGQ HCHQTVGFPR GGIFPAHDPH NFTSHHHLPP PLPNPYYYQE  240
LLHQLHSENT SSLQLPQSTT EDGHVAVSSI NQPEEGLLGD IVPQTMRNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24136203774Probable WRKY transcription factor 4
2lex_A2e-24136203774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931340.0KM593134.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105004.10.0PREDICTED: probable WRKY transcription factor 57
RefseqXP_013649096.10.0probable WRKY transcription factor 57
SwissprotQ9C9831e-122WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLM4CIG80.0M4CIG8_BRARP; Uncharacterized protein
STRINGBra004002.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-100WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]