PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009104862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24159.7 Da PI: 8.1771 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.2 | 7.9e-22 | 50 | 98 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++ +rqvtfskRr+g++KKA ELSvLC+a++ +i fs ++y + XP_009104862.1 50 KEIQEENRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRCERIYVF 98 67999************************************99999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.866 | 42 | 102 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-26 | 42 | 101 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 6.09E-28 | 43 | 99 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-22 | 43 | 110 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-19 | 44 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-21 | 52 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-19 | 64 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-19 | 79 | 100 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MENGEASLIT CLPFKEQKPM QKPNLAVKQR NGRKQQNPKT TKGRQRIEIK EIQEENRRQV 60 TFSKRRTGLF KKAAELSVLC GAQIGIITFS RCERIYVFGN VNTLIESYLR KTPVMLRSYY 120 GGDVAAGVDG DGPMWWERAV ESVPEEEMDE YMKGLNGLRE NLWTRICEMG GDPTVQMNAQ 180 ICPDLMAPVN WKLMDENLAV RNDQGQAGYD GY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009104862.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189575 | 0.0 | AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104862.1 | 1e-158 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Refseq | XP_013651170.1 | 1e-158 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A3P6BWN2 | 1e-156 | A0A3P6BWN2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CI51 | 1e-156 | M4CI51_BRARP; Uncharacterized protein | ||||
STRING | Bra003884.1-P | 1e-157 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 4e-71 | M-type_MADS family protein |