PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104726.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 160aa    MW: 18787.4 Da    PI: 7.5045
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.63.7e-131613911128
             NAM  11 deelvveyLkkkvegkkleleevikev..diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWk.atgkdkevlsk.kgel 99 
                      +e++  yL++k+egk + +   + e+  ++y+ ePw Lp++++   + +ew++F +++    +++  + + ++g W   +g+  ++ s+ +ge 
  XP_009104726.1  16 HNEIIESYLRPKIEGKAVAIPGLVVELgeELYTREPWLLPQRAHPvlNPREWFYFGRKKP---NDRIFEGVDHEGAWVvLSGRCDPIRSEeTGEI 107
                     579**************9998887777668**********6443334678**99987654...55566778899***967899999999645555 PP

             NAM 100 vglkktLvfy...kgrapkgektdWvmheyrl 128
                     vg    + +    kg++ + + ++W+m eyrl
  XP_009104726.1 108 VGATMRFRYGfrnKGESTSLRWSNWFMREYRL 139
                     66555555446566777777889*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.026158IPR003441NAC domain
PfamPF023654.1E-816139IPR003441NAC domain
SuperFamilySSF1019415.23E-1917156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTMLAGYGED ESWISHNEII ESYLRPKIEG KAVAIPGLVV ELGEELYTRE PWLLPQRAHP  60
VLNPREWFYF GRKKPNDRIF EGVDHEGAWV VLSGRCDPIR SEETGEIVGA TMRFRYGFRN  120
KGESTSLRWS NWFMREYRLF NHVRQTTSKQ VFCKITENLC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104726.11e-117PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 19
TrEMBLA0A397YNI04e-86A0A397YNI0_BRACM; Uncharacterized protein (Fragment)
STRINGBra025701.1-P1e-66(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.11e-51NAC domain containing protein 27