PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104712.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 294aa    MW: 32476 Da    PI: 8.6761
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.4e-3264118358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     +vrY+eClkNhAas+Gg ++DGCgEfmps geegt +al+CaAC+CHRnFHR+e++
  XP_009104712.1  64 TVRYRECLKNHAASVGGSVYDGCGEFMPS-GEEGTLEALRCAACDCHRNFHRKEND 118
                     79**************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2564118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.9E-3065117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-3066116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.83867116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.11E-18215286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-31215287IPR009057Homeodomain-like
TIGRFAMsTIGR015653.3E-30226282IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDMRSHEMIE RRRDDNGNNG VGNINSIITN EDNCNGNNNT RVSSNSQTLV PHQSKSSPSF  60
SISTVRYREC LKNHAASVGG SVYDGCGEFM PSGEEGTLEA LRCAACDCHR NFHRKENDGV  120
GSSDGSSHHR HHHHHHQYGG GRRPPPRNMM LNPLMLPPPP SYAPLHHHKY GMSPPGGGGM  180
VTPMSFPYGG GGGGAESSSE DLNMYGQSSG ENGGGVTPGQ TAFSMKRFRT KFTAEQKEKM  240
MEFAEKLGWR MNKQDEEDLK RFCGEIGVKR QVFKVWMHNN KNNARKQPTP TTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-242242841676ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104712.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0258141e-172AC025814.7 Arabidopsis thaliana chromosome 1 BAC F22H5 genomic sequence, complete sequence.
GenBankAK2290381e-172AK229038.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-33-K14.
GenBankAY0844621e-172AY084462.1 Arabidopsis thaliana clone 10873 mRNA, complete sequence.
GenBankBT0288941e-172BT028894.1 Arabidopsis thaliana unknown protein (At1g75240) mRNA, complete cds.
GenBankCP0026841e-172CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104712.10.0PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_013648911.10.0zinc-finger homeodomain protein 5-like
RefseqXP_018508341.10.0PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_022544710.10.0zinc-finger homeodomain protein 5-like
SwissprotQ9FRL51e-115ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLM4CHS60.0M4CHS6_BRARP; Uncharacterized protein
STRINGBra003759.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-103homeobox protein 33