PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009104600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 546aa MW: 59807.9 Da PI: 5.019 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.3e-23 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+ltpsd+++ g +++p+ +a++ ++ + +l ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ ++s XP_009104600.1 123 FAKILTPSDANNGGGFSVPRYCADSVfppldfhADPPVQ--KLFITDIHGVVWDFRHIYRGTPRRHLLTTGWSKFVNGKKLIAGDSVVFM--RKS 213 89*********************999*****97555555..7************************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 e++++v+r+ XP_009104600.1 214 VDEMFIGVRRA 224 88899***997 PP | |||||||
2 | Auxin_resp | 69.8 | 8.7e-24 | 257 | 331 | 1 | 75 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWp 75 a+++a ++ +FevvY+P a++s+Fvv++e+ve ++ +s+G+R+kma+etedss+ ++ +G+v+++ + ++ W+ XP_009104600.1 257 AVNKAVQGYPFEVVYYPTAGWSDFVVRAEDVEVSMAGYWSPGTRVKMAMETEDSSRVTWfQGVVSSTFQ-ETGLWK 331 6789999****************************************************9999998876.444554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-33 | 113 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-29 | 116 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-20 | 123 | 224 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.61E-20 | 123 | 219 | No hit | No description |
SMART | SM01019 | 4.2E-20 | 123 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.647 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-18 | 257 | 331 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MSPPPSATAD FLREVDPQIW RACAGASVQI PSLYSRVYYF PQGHVEHSCP SSLISSFSTA 60 APVPCVVSAV ELLADPITDE VFAHLALQPI SPEHFSPSNF SGFGSDDDDD NNSNSNKNKV 120 VTFAKILTPS DANNGGGFSV PRYCADSVFP PLDFHADPPV QKLFITDIHG VVWDFRHIYR 180 GTPRRHLLTT GWSKFVNGKK LIAGDSVVFM RKSVDEMFIG VRRAPISNHG DEYYGGGKKG 240 FRRIGMGKLT AEAVSEAVNK AVQGYPFEVV YYPTAGWSDF VVRAEDVEVS MAGYWSPGTR 300 VKMAMETEDS SRVTWFQGVV SSTFQETGLW KQLQITWDEP EILQNLKRVN PWQVEVVANS 360 SHLLAIYPPA KRLKPSSSAS GFLSGEGEML YSGRGQQAVD PSPYLFSYTT FPAGMQGARH 420 YEFGSFNSIG FIGENTPQLC TNNFFSPLPG LRKVSTEMVN YGSPLSDDLS PNSNTTNVSS 480 GNELVGNRGH AVRVSSIQLF GQIINVQELT ESGLAEGLYE EDGSKESSDN EVVNETQLSL 540 TYAQGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-62 | 15 | 356 | 51 | 389 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009104600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979479 | 0.0 | JN979479.1 Brassica rapa subsp. pekinensis auxin response factor 17-1 (ARF17-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104599.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | M4CHI2 | 0.0 | M4CHI2_BRARP; Auxin response factor | ||||
STRING | Bra003665.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 0.0 | auxin response factor 17 |