PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104010.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 373aa    MW: 42840.4 Da    PI: 4.7085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.49.4e-132093102113
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     p+G+rF P+d+ + ++yL++kv ++++++  +  e+ +i+++ P+dLp      e+ew+ ++++ +    g+ + r    + W   g+d+ v+  
  XP_009104010.1 209 PAGCRFLPSDDMMANYYLRNKVLEQPINACIIPGECpHIFSIPPRDLPGY--PIETEWHCYCRKPN----GQDP-R----SLWTRMGEDTIVFGL 292
                     89**************************9777777799**********33..3478******9855....4444.3....47************9 PP

             NAM  96 kgelvglkktLvfykgra 113
                     +g+ vg+k+t ++ ++++
  XP_009104010.1 293 EGNSVGIKRTYALTDQEK 310
                     **********99984333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011917.6E-836102IPR005491ENT domain
PROSITE profilePS5113810.66536123IPR005491ENT domain
SuperFamilySSF1586398.89E-73795IPR005491ENT domain
PfamPF037351.1E-113793IPR005491ENT domain
SMARTSM011911.8129189IPR005491ENT domain
PfamPF037352.0E-7132192IPR005491ENT domain
SuperFamilySSF1019415.36E-16207351IPR003441NAC domain
PROSITE profilePS5100518.714208352IPR003441NAC domain
PfamPF023656.8E-7209333IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MADNKDLDSN PPADLTICPL KKIEIAHESE SEPELKKQKL KELQRKAYYS VLHTSKAENS  60
ATSHKKSHII QRLMNEWKID QETHVSVAKK VDNSQERNAT SSLNFVPESL VVKRISARLP  120
NEECLPSNKN MKLEELHKQA YEDVLSAFNA ESPTLSSSRV LIVQDLLEEC NNIDHKAHIS  180
AKIYDKVETD PLLVEPFIKF FNTLKKFHPA GCRFLPSDDM MANYYLRNKV LEQPINACII  240
PGECPHIFSI PPRDLPGYPI ETEWHCYCRK PNGQDPRSLW TRMGEDTIVF GLEGNSVGIK  300
RTYALTDQEK GSDDIFLPGE IEPPREEWFI EEISLPPSVV DTDLVFCHVI LNKIEKKEEY  360
EEEEEYDDDA EEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104009.10.0PREDICTED: uncharacterized protein LOC103830058 isoform X1
TrEMBLM4CGB10.0M4CGB1_BRARP; Uncharacterized protein
STRINGBra003244.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.12e-35NAC family protein