PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103758.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 899aa    MW: 100823 Da    PI: 8.4752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-141001761295
                     HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      ++ l +p  f+++h  g + +  k  +l++  s ++W+vk+  ++++    +t+GW++F+ a++L++gD+ vF+++g++ f  +v+
  XP_009103758.1 100 HTH-LNIPVAFFSTHikGRNDHI-KIAKLRTdASDKTWKVKM--DGSK----FTDGWEDFAVAHDLRVGDITVFRHEGEMVF--HVT 176
                     444.99*********97333333.34555554999*******..9999....9**********************9998888..665 PP
2B358.51.2e-18239328798
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++++lk++ l+l ++f++++g++k +s +++l++e g +W++ l++ k+ ++++l+ GW  F++ ng+k+ D ++Fkl++ +++++v+ ++ 
  XP_009103758.1 239 SASSLKHNKLYLGREFVTSNGLNKGCS-EIVLKNEGGGRWTLPLKHYKSINHTYLGPGWTTFCQVNGIKAEDAFMFKLVR-TGEKPVLCLCP 328
                     678999******************998.****************99********************************98.77778988885 PP
3B340.83.9e-13380469293
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ++ +++  + k+ +l lp  fa+++g++k++  ++tl  ++g + ev l+ +k+ g++ ++kG + F +a+gLk g  +v++l++++e+++v
  XP_009103758.1 380 LTLTLTQKAVKRYQLFLPMGFAKRNGINKPG--KITLLGQDGVKQEVALKQNKRAGQMQIGKGCRVFRDAHGLKIGQPFVLELIWEDEASPV 469
                     55666777888889************99776..7***************99999999****************************9877666 PP
4B339.97.3e-135235961796
                     E--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  17 vlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++p  f+ +h  g +    k  +l++  s ++W+vk+      +++ lt GW++F+ a++L++gD++vF+++g+  f  +v++
  XP_009103758.1 523 TIPVAFFLKHvqGRN-DHIKIAKLTTaASDKTWTVKM------DGFKLTHGWEDFAVAHDLRVGDMIVFRHEGELAF--HVTI 596
                     699999999986333.33345666665788*******......5677***********************8876555..7766 PP
5B358.71.1e-18631723498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + +++++l+++rl+lp +fa+++g++k ++ +++l + +grsW++kl+++k++ +++ + GW++F+ +ng+  g   ++kl++ +++ +v+k++ 
  XP_009103758.1 631 AKVSASNLRLDRLYLPMSFARTNGLDKMSGEQIILLNGEGRSWSLKLKHDKSDMHTFVRPGWRRFCAENGMSHGHY-TLKLIR-NSGPPVIKLCG 723
                     5567999*******************************************************************96.999998.77779999986 PP
6B361.31.6e-19746837598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++s++lk++ l+l kkf+ e+g++  +s +++l++e+g +W++ l++  +  +++l+ GW+ F++ n++k+gD++ Fkl+g ++ ++v+ ++ 
  XP_009103758.1 746 SVTSNSLKTDKLYLGKKFVIENGLDRGCS-EMVLKNEWGGRWSLALRFYESAYQTYLGPGWRTFCQVNEIKVGDSFKFKLVG-TGDNPVLLLCT 837
                     57999********************9887.******************999999**************************99.55557777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.26588181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-1890183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1690188IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-1490176No hitNo description
SMARTSM010191.3E-2191181IPR003340B3 DNA binding domain
PfamPF023622.3E-8102173IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-17231329IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.802233329IPR003340B3 DNA binding domain
CDDcd100177.07E-13233328No hitNo description
SuperFamilySSF1019363.73E-16233330IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-20234330IPR003340B3 DNA binding domain
PfamPF023623.1E-17238328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-14369465IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-13375464IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-9378464No hitNo description
SMARTSM010193.2E-14379476IPR003340B3 DNA binding domain
PfamPF023627.0E-13379469IPR003340B3 DNA binding domain
PROSITE profilePS508638.374379475IPR003340B3 DNA binding domain
SMARTSM010191.2E-11511600IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-15516606IPR015300DNA-binding pseudobarrel domain
CDDcd100176.14E-11523596No hitNo description
PfamPF023625.3E-8523594IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-16524610IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.068545600IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-17621718IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-15624723IPR015300DNA-binding pseudobarrel domain
CDDcd100177.40E-14628722No hitNo description
PROSITE profilePS5086312.887628725IPR003340B3 DNA binding domain
SMARTSM010191.5E-23629725IPR003340B3 DNA binding domain
PfamPF023621.5E-17630723IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-16738836IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-17740842IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-15742836No hitNo description
PROSITE profilePS5086313.817742838IPR003340B3 DNA binding domain
SMARTSM010192.1E-20743839IPR003340B3 DNA binding domain
PfamPF023621.8E-18746838IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MGKKHIKGAG AEGEAEMELV GGIEEGSVNE RLPTHLCATN RFPSKMNNYY LSLEYLLLVR  60
DVLEGTDEME RLLDSCFGQY FRLSQWWINL FFQPLLPGFH THLNIPVAFF STHIKGRNDH  120
IKIAKLRTDA SDKTWKVKMD GSKFTDGWED FAVAHDLRVG DITVFRHEGE MVFHVTALGP  180
SFCEIQYTSS HNINDDTHDQ TNNIVTGNSS REKRKRVKKN PKPVPQASLH SSCYVGSVSA  240
SSLKHNKLYL GREFVTSNGL NKGCSEIVLK NEGGGRWTLP LKHYKSINHT YLGPGWTTFC  300
QVNGIKAEDA FMFKLVRTGE KPVLCLCPEE SSHRDKTPVE CLEDSDDVNP LSSSSKSKES  360
KEESLGDKRA SSSYSEDRFL TLTLTQKAVK RYQLFLPMGF AKRNGINKPG KITLLGQDGV  420
KQEVALKQNK RAGQMQIGKG CRVFRDAHGL KIGQPFVLEL IWEDEASPVL NNGGSISSLS  480
SQTTLLPASS SPLPHSPRTT TLFRFKNTTM FHLLNLVPCL VQTIPVAFFL KHVQGRNDHI  540
KIAKLTTAAS DKTWTVKMDG FKLTHGWEDF AVAHDLRVGD MIVFRHEGEL AFHVTIMGPS  600
CCEIQYTHNI NHNHTNNIIE SSSSDNSLFV AKVSASNLRL DRLYLPMSFA RTNGLDKMSG  660
EQIILLNGEG RSWSLKLKHD KSDMHTFVRP GWRRFCAENG MSHGHYTLKL IRNSGPPVIK  720
LCGQVHNRPK PVPVVSSLHH SCFVGSVTSN SLKTDKLYLG KKFVIENGLD RGCSEMVLKN  780
EWGGRWSLAL RFYESAYQTY LGPGWRTFCQ VNEIKVGDSF KFKLVGTGDN PVLLLCTRKM  840
PLECPGENSG SDTSSGDDSS EPQESEEESL GDKNISQECV KMEKNEEFVE MQNTKRRSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6085636e-96AB608563.1 Raphanus sativus DNA, microsatellite locus RsSR037, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022562372.10.0B3 domain-containing protein REM17-like
TrEMBLA0A397YL870.0A0A397YL87_BRACM; Uncharacterized protein (Fragment)
STRINGBra012445.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-113B3 family protein