PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009103592.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 343aa MW: 38928.5 Da PI: 5.3613

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009103592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156	1.6e-48	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l pGfrF+Ptd el+++yL++k+eg+++++ vi+ev+iyk+ePwdLp ++ ++e+ew++F+ r +ky++g++++rat+ gyWkatgk+++v++ XP_009103592.1 14 LFPGFRFSPTDVELISYYLRRKIEGDENSV-AVIAEVEIYKFEPWDLPgESKLKSENEWFYFCARGRKYPHGSQSRRATELGYWKATGKERSVKA 107 579**********************999.89***********543334678*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+k+tLvf+ grap+ge+t+W+mhey + XP_009103592.1 108 -GNQIVGTKRTLVFHIGRAPRGERTEWIMHEYCI 140 .999**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-54	6	155	IPR003441	NAC domain
PROSITE profile	PS51005	52.707	14	156	IPR003441	NAC domain
Pfam	PF02365	2.1E-24	16	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0033619	Biological Process	membrane protein proteolysis
GO:0048573	Biological Process	photoperiodism, flowering
GO:0071472	Biological Process	cellular response to salt stress
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIEGDE NSVAVIAEVE IYKFEPWDLP 60 GESKLKSENE WFYFCARGRK YPHGSQSRRA TELGYWKATG KERSVKAGNQ IVGTKRTLVF 120 HIGRAPRGER TEWIMHEYCI HGASQDALVV CRLRKNADFR ASSSQRQMED GLVQDDDYVG 180 QTGGSEREKK SYLVDEPEQL QISNGDIAES SNVVEDDTND DCYAEILNDD IIKLDEEAVK 240 ANQAFRTNYP TQQETIFTEA SSSKQMSECG TKKESKQTMN SYALFRIRND STASSSGWRI 300 PNPLTHIKKD DTQRVTKNVL ATTVFLTILM SVLFTVLTGR DRD

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIEGDE NSVAVIAEVE IYKFEPWDLP  60
GESKLKSENE WFYFCARGRK YPHGSQSRRA TELGYWKATG KERSVKAGNQ IVGTKRTLVF  120
HIGRAPRGER TEWIMHEYCI HGASQDALVV CRLRKNADFR ASSSQRQMED GLVQDDDYVG  180
QTGGSEREKK SYLVDEPEQL QISNGDIAES SNVVEDDTND DCYAEILNDD IIKLDEEAVK  240
ANQAFRTNYP TQQETIFTEA SSSKQMSECG TKKESKQTMN SYALFRIRND STASSSGWRI  300
PNPLTHIKKD DTQRVTKNVL ATTVFLTILM SVLFTVLTGR DRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-43	13	166	19	174	NAC domain-containing protein 19
3swm_B	5e-43	13	166	19	174	NAC domain-containing protein 19
3swm_C	5e-43	13	166	19	174	NAC domain-containing protein 19
3swm_D	5e-43	13	166	19	174	NAC domain-containing protein 19
3swp_A	5e-43	13	166	19	174	NAC domain-containing protein 19
3swp_B	5e-43	13	166	19	174	NAC domain-containing protein 19
3swp_C	5e-43	13	166	19	174	NAC domain-containing protein 19
3swp_D	5e-43	13	166	19	174	NAC domain-containing protein 19
3ulx_A	5e-43	4	153	10	165	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates in imbibed seeds (PubMed:19704545). Detected in early stages of seed development, especially in the basal tip of immature embryo. Particularly expressed in vascular tissues of inflorescence stems, roots, leaves and petioles (PubMed:17410378). {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:19704545}.
Uniprot	TISSUE SPECIFICITY: Expressed in seeds, leaves, roots and inflorescence (PubMed:17410378). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00280	DAP	Transfer from AT2G27300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009103592.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009103592.1	0.0	PREDICTED: NAC domain-containing protein 40 isoform X2
Swissprot	Q9XIN7	0.0	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	M4D6B5	0.0	M4D6B5_BRARP; Uncharacterized protein
STRING	Bra012024.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	0.0	NTM1-like 8

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]