PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103464.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 327aa    MW: 37707.5 Da    PI: 9.0652
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-1823110198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv      ++s++lv+p  f+ ++ ++k+ +k+++l de gr W+v+     k g +v+++GW++F++++ L+ gDf++F+++g+s+f   v+
  XP_009103464.1  23 FFKVY--LPEFSSHQLVIPQAFI-NI-LDKPLPKKVVLVDEIGRLWDVET----KIGVVVFRQGWEKFANEHSLEFGDFLLFRYNGESRF--DVT 107
                     77877..78999***********.44.56789******************....5567***************************99999..888 PP

                     EE- CS
              B3  96 vfr 98 
                     +f 
  XP_009103464.1 108 IFA 110
                     876 PP
2B340.74.2e-13219310998
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                      v+++++l +p +f++++g++ ee++++ l de+g++W +k+  +k++++ ++  + W  F+++++L+    ++F+++  ++ ++ + +v++fr
  XP_009103464.1 219 AVGSLRLLEIPTTFLKANGIELEEGQDIELCDENGKKWPLKI--EKHGRGcIFSYDSWLCFCESHNLRNPNKCLFEFIvsSNgTCSQILVRIFR 310
                     6889999***********98889999****************..999999555559********************653355677777888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2220114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-2221114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.57921112IPR003340B3 DNA binding domain
CDDcd100171.13E-1823109No hitNo description
SMARTSM010199.3E-1823112IPR003340B3 DNA binding domain
PfamPF023623.4E-1623109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-14207310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15207310IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.898211312IPR003340B3 DNA binding domain
CDDcd100176.93E-11212310No hitNo description
SMARTSM010192.3E-10214312IPR003340B3 DNA binding domain
PfamPF023621.1E-10218311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVETSEKTPS PSSSSHGRKD LEFFKVYLPE FSSHQLVIPQ AFINILDKPL PKKVVLVDEI  60
GRLWDVETKI GVVVFRQGWE KFANEHSLEF GDFLLFRYNG ESRFDVTIFA KDGCKKDLDR  120
FRVSVEKEPV LVKPVGISIK PEPWEDCGKR VMQNRKRVSV REEASVFGEI EPVHQRNTRK  180
KVNRSRDPRE MSWVPEKKHK GSEEPVYKPK NPHFVRKIAV GSLRLLEIPT TFLKANGIEL  240
EEGQDIELCD ENGKKWPLKI EKHGRGCIFS YDSWLCFCES HNLRNPNKCL FEFIVSSNGT  300
CSQILVRIFR GTLLTTATKS GYHVLPM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103464.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103464.10.0PREDICTED: putative B3 domain-containing protein At5g66980
RefseqXP_018508570.10.0PREDICTED: putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-122Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A397YM180.0A0A397YM18_BRACM; Uncharacterized protein
TrEMBLM4D6L20.0M4D6L2_BRARP; Uncharacterized protein
STRINGBra012121.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-125B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]