PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009103463.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 327aa MW: 37707.5 Da PI: 9.0652 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.3e-18 | 23 | 110 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv ++s++lv+p f+ ++ ++k+ +k+++l de gr W+v+ k g +v+++GW++F++++ L+ gDf++F+++g+s+f v+ XP_009103463.1 23 FFKVY--LPEFSSHQLVIPQAFI-NI-LDKPLPKKVVLVDEIGRLWDVET----KIGVVVFRQGWEKFANEHSLEFGDFLLFRYNGESRF--DVT 107 77877..78999***********.44.56789******************....5567***************************99999..888 PP EE- CS B3 96 vfr 98 +f XP_009103463.1 108 IFA 110 876 PP | |||||||
2 | B3 | 40.7 | 4.2e-13 | 219 | 310 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 v+++++l +p +f++++g++ ee++++ l de+g++W +k+ +k++++ ++ + W F+++++L+ ++F+++ ++ ++ + +v++fr XP_009103463.1 219 AVGSLRLLEIPTTFLKANGIELEEGQDIELCDENGKKWPLKI--EKHGRGcIFSYDSWLCFCESHNLRNPNKCLFEFIvsSNgTCSQILVRIFR 310 6889999***********98889999****************..999999555559********************653355677777888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-22 | 20 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 21 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.579 | 21 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.13E-18 | 23 | 109 | No hit | No description |
SMART | SM01019 | 9.3E-18 | 23 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-16 | 23 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-14 | 207 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-15 | 207 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.898 | 211 | 312 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.93E-11 | 212 | 310 | No hit | No description |
SMART | SM01019 | 2.3E-10 | 214 | 312 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-10 | 218 | 311 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MVETSEKTPS PSSSSHGRKD LEFFKVYLPE FSSHQLVIPQ AFINILDKPL PKKVVLVDEI 60 GRLWDVETKI GVVVFRQGWE KFANEHSLEF GDFLLFRYNG ESRFDVTIFA KDGCKKDLDR 120 FRVSVEKEPV LVKPVGISIK PEPWEDCGKR VMQNRKRVSV REEASVFGEI EPVHQRNTRK 180 KVNRSRDPRE MSWVPEKKHK GSEEPVYKPK NPHFVRKIAV GSLRLLEIPT TFLKANGIEL 240 EEGQDIELCD ENGKKWPLKI EKHGRGCIFS YDSWLCFCES HNLRNPNKCL FEFIVSSNGT 300 CSQILVRIFR GTLLTTATKS GYHVLPM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009103463.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009103464.1 | 0.0 | PREDICTED: putative B3 domain-containing protein At5g66980 | ||||
Refseq | XP_018508570.1 | 0.0 | PREDICTED: putative B3 domain-containing protein At5g66980 | ||||
Swissprot | Q9FGD2 | 1e-122 | Y5698_ARATH; Putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | A0A397YM18 | 0.0 | A0A397YM18_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D6L2 | 0.0 | M4D6L2_BRARP; Uncharacterized protein | ||||
STRING | Bra012121.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12802 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-125 | B3 family protein |
Publications ? help Back to Top | |||
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