PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009103300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 24796 Da PI: 5.0644 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.2 | 6.2e-10 | 95 | 196 | 33 | 128 |
NAM 33 vikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy........kgrapkge 117 + + diy+v+P++L + +++ + + F++r ++ +sg+W+ +d++++s ++e++g k+++ fy + + + + XP_009103300.1 95 CYVTNDIYRVHPSTLVdHeDKRSTASGLCVFANRTEACG--YT--DGCESGRWRIVEEDNAIFSMSHEVMGYKRVFKFYeedkgryfDIVDGEQV 185 45667**********732233334457799999988764..33..33579*****************************5553332212233345 PP NAM 118 ktdWvmheyrl 128 +W+m+eyrl XP_009103300.1 186 LRTWIMEEYRL 196 678******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-7 | 3 | 74 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.5 | 63 | 212 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.81E-21 | 79 | 210 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-4 | 126 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MEDRDVFTKN PSEVFEAENP FVVFVYPRTE ACGRTDGCGC GGWRIIGHDK LIKDEDTGKI 60 LGFKKILKFR LANQQDDGAY YLQVIFDSGG NEWPCYVTND IYRVHPSTLV DHEDKRSTAS 120 GLCVFANRTE ACGYTDGCES GRWRIVEEDN AIFSMSHEVM GYKRVFKFYE EDKGRYFDIV 180 DGEQVLRTWI MEEYRLVEEA MKDKVLCVIK RGRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009103300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105381.1 | 1e-126 | PREDICTED: uncharacterized protein LOC103831246 | ||||
TrEMBL | M4ERU1 | 1e-125 | M4ERU1_BRARP; Uncharacterized protein | ||||
STRING | Bra031518.1-P | 1e-126 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60380.1 | 3e-47 | NAC family protein |