PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G60380.1 | ||||||||
Common Name | T13D8.25 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 37404.4 Da PI: 9.0656 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.7 | 3.8e-09 | 9 | 121 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkkt 105 +de ++++yLk+ + ++ + +i+++d+++ +P + + e+ f + + +++a gk +sg W+ g+dk ++s+ +g+ g kk+ AT1G60380.1 9 EDEVIISRYLKPMIVNRVSWPDLFIEDADVFNKDPYVK---F--H-AEIpSFVIVKPRTKACGKTDG--CDSGCWRIIGRDKLIKSEeTGKILGFKKI 98 588899*******99998555457***********643...2..2.233245555555555554444..479*************98778889***** PP NAM 106 LvfykgrapkgektdWvmheyrl 128 L f + +p+ k + vm+eyrl AT1G60380.1 99 LKFCLKWKPREYKRSLVMEEYRL 121 ******9**************98 PP | |||||||
2 | NAM | 33.6 | 1.1e-10 | 200 | 293 | 37 | 128 |
NAM 37 vdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy......k.grapkgektdWvmhe 125 ++y ++P++L + k +++ + F++r + + ++gyWk + ++k ++s+ g+++g kk++ fy + g + + +k +W+++e AT1G60380.1 200 NNVYCLHPSELVNvhDGKFHDNGICIFANRTCGV-----TDK-CNEGYWKIKHREKLIMSRYGQTIGWKKVFQFYetekerHfG-NGEEVKVTWTLKE 290 4789999999973223334677888888775543.....334.578*****************************443322112.233469******* PP NAM 126 yrl 128 yrl AT1G60380.1 291 YRL 293 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.559 | 1 | 139 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.06E-24 | 9 | 137 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-6 | 9 | 121 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.89E-31 | 150 | 309 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.596 | 164 | 309 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-6 | 224 | 293 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MADTLLNAED EVIISRYLKP MIVNRVSWPD LFIEDADVFN KDPYVKFHAE IPSFVIVKPR 60 TKACGKTDGC DSGCWRIIGR DKLIKSEETG KILGFKKILK FCLKWKPREY KRSLVMEEYR 120 LTNNFNWKQD HVICKIRLLF EAEISFLLAK HFYTTSDSLP RNVLLPAYGF CSPDKQEEDE 180 FYPVTIMISE GKDWPSYVTN NVYCLHPSEL VNVHDGKFHD NGICIFANRT CGVTDKCNEG 240 YWKIKHREKL IMSRYGQTIG WKKVFQFYET EKERHFGNGE EVKVTWTLKE YRLTRKMNKN 300 KVVCVIKYKV KCLPRITS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18406727 | 0.0 | ||||
Genevisible | 264276_at | 0.0 | ||||
Expression Atlas | AT1G60380 | - | ||||
AtGenExpress | AT1G60380 | - | ||||
ATTED-II | AT1G60380 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G60380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G60380 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ056501 | 0.0 | DQ056501.1 Arabidopsis thaliana apical meristem formation protein-related (At1g60380) mRNA, complete cds. | |||
GenBank | T13D8 | 0.0 | AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176241.1 | 0.0 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
TrEMBL | O80759 | 0.0 | O80759_ARATH; Apical meristem formation protein-related | ||||
STRING | AT1G60380.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Link Out ? help Back to Top | |
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Phytozome | AT1G60380.1 |
Entrez Gene | 842333 |
iHOP | AT1G60380 |
wikigenes | AT1G60380 |
Publications ? help Back to Top | |||
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