PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009103218.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 15924.6 Da PI: 6.661 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 9.3e-17 | 8 | 58 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykG+r++k +g+Wv+eIr+p + r r +lg+f tae+Aa a++ a +l++ XP_009103218.1 8 SKYKGIRRRK-WGKWVSEIRVPGT---RDRLWLGSFSTAEGAAVAHDVAFYCLHQ 58 89*****998.**********943...5*********************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.16E-17 | 8 | 69 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-8 | 8 | 56 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.80E-28 | 8 | 70 | No hit | No description |
SMART | SM00380 | 1.5E-30 | 9 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-25 | 9 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.351 | 9 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-9 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-9 | 32 | 48 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDCSESQSKY KGIRRRKWGK WVSEIRVPGT RDRLWLGSFS TAEGAAVAHD VAFYCLHQPN 60 SLESLNFPHL LPPYIASNNT SPRSIQQAAS NAGMAVDAGI VNSNGVSGNS GCGDTTAYCG 120 NGGGVVEPLN ISVYDYLDGH EHVWSSSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009103218.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009103218.1 | 1e-108 | PREDICTED: ethylene-responsive transcription factor ERF019-like | ||||
Swissprot | O80542 | 4e-80 | ERF19_ARATH; Ethylene-responsive transcription factor ERF019 | ||||
TrEMBL | M4D785 | 1e-106 | M4D785_BRARP; Uncharacterized protein | ||||
STRING | Bra012345.1-P | 1e-107 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3865 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 4e-77 | ERF family protein |
Publications ? help Back to Top | |||
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