PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103018.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 507aa    MW: 60827.5 Da    PI: 7.8723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.2e-08359380526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+f+++ G+C +G+ C F H+
  XP_009103018.1 359 VCHFYLKKGWCGFGSDCVFKHP 380
                     6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-4348379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6352385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108354382IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-6359380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MADALDNQQE VQRSGSNETE SRSNEETKGQ TLDMRPSGSG TRSVEKAVVR YDRDTRFRDA  60
NREATPDRDP IAHAIYWEKK VQELRVRNAE MKQRRANETI QKQRLRNAEM QQRRANKTES  120
ISIEETKGET VDMRPSGPWE KAVIRYDRDT RFWEDKMQQQ RLRDVEMRQR RANETESRSI  180
EETEFTVDCQ GETVDTRPSG SGEKVGQTRP SGSRRWSPVV RYNRDTRSWE ENREYLESSG  240
RENEAVQIRD QNETYIQQRQ RDDEMQQRRS RETESIFFQQ QKNREYECSG SRMNEAGPIR  300
DPRILENLRD FGMQQRRRHE TEWRFQKQQN RAEAPDLGYK RRRFEQEQYP TRPRIKKGVC  360
HFYLKKGWCG FGSDCVFKHP TPSWRFDERR YETEVPENMA RTVYGRESGS TWRFDEERES  420
GYGEAQENNI WWQRREDPEN VWEQRDSTAG WLSYDERRRN PATGEILMRP PRRMEQRDRE  480
REVRNEGAHN RESSPQLGTE REESDGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022545243.10.0trichohyalin-like
TrEMBLM4EMY10.0M4EMY1_BRARP; Uncharacterized protein
STRINGBra030151.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2341133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29570.12e-08C3H family protein