PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009102907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 34949.2 Da PI: 8.2175 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.7 | 1.4e-33 | 77 | 217 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+P+d+e++ +L++kv+++k ++++ ++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + XP_009102907.1 77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklyplIDEFIPtLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeeghET 169 799***********9.89*****99996776543332222443346**********.566677888******************73334544478 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk++++ls + + g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_009102907.1 170 RWHKTGKTRPILS-QAGVAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 217 8************.8889**********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-36 | 71 | 236 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.704 | 77 | 236 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 78 | 217 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MSWCDDSDDN YDPNLERASN IDHPSIQLKN QSQSCVTSAP DSKIIVDAPI VMTCSSCGQK 60 IHQQDEQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLYPLID EFIPTLEGEN 120 GICYTHPEKL PGVSKDGQVR HFFHRPSKAY TTGTRKRRKV STDEEGHETR WHKTGKTRPI 180 LSQAGVAGFK KILVLYTNYG RQKKPEKTNW VMHQYHLGHS EDEKDGEPVL SKVFYQTQPR 240 QCGGSTEPKP KSRVNLNRFS YENHAGFGYE HKGKNEENTQ VIREGDVSCS FLSFTCDASK 300 GKESFMKKI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009102907.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738267 | 0.0 | KF738267.1 Brassica napus NAC transcription factor 10-1 (NAC10-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102907.1 | 0.0 | PREDICTED: NAC domain-containing protein 10-like isoform X2 | ||||
Refseq | XP_013651558.1 | 0.0 | NAC domain-containing protein 10-like isoform X1 | ||||
Swissprot | F4HY61 | 0.0 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | A0A397YJB0 | 0.0 | A0A397YJB0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EMS9 | 0.0 | M4EMS9_BRARP; Uncharacterized protein | ||||
STRING | Bra030099.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 0.0 | NAC domain containing protein 10 |