PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102846.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 361aa    MW: 41791.8 Da    PI: 6.7841
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-0682106327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      + C +++++G C +G +C+++H+p
  XP_009102846.1  82 VADCYYYLKNGGCFFGRSCRYNHPP 106
                     689********************97 PP
2zf-CCCH31.72.5e-10110133326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C  +++tG+C+yG rC+F+H+
  XP_009102846.1 110 ARDCEQYLQTGQCSYGRRCRFNHP 133
                     589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.72879106IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-479106IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544107135IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8110133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5111137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5113132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSDREDSEME IEEAKKNDPR RESTSMEETE GQDTDLRTRE ADDRTDWRHK RDPRSSAEKR  60
DNATQMRHEL GQSSEYPVRT GVADCYYYLK NGGCFFGRSC RYNHPPLPGA RDCEQYLQTG  120
QCSYGRRCRF NHPLTHLAPY FQKGGCKHGS SFQFTNSMRG DGIEPMRQAT TWGRRSDERR  180
HETESSSRAE KRARTIPDYP SVIQDVSDEV GAGQNSWLQR RRAQRGKIDC GQRRVSEEER  240
TLRETVPCTV LVLYSQERQT HDLEEQKQRE RVYENLRIDQ IKASVQSDGG IQTEQRLEIP  300
ENHSVNAQEN LQEQADVEKE KRKAQEKAQE ERSRSLTGNV DQLIQSLQDN IGIGRKKGDG  360
V
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102846.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102846.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 9 isoform X4
TrEMBLA0A3P6B9D00.0A0A3P6B9D0_BRACM; Uncharacterized protein
STRINGBo7g045340.11e-161(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.11e-15C3H family protein