PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009102841.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 78aa MW: 8896.81 Da PI: 8.9461 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 37.6 | 6.4e-12 | 3 | 71 | 28 | 100 |
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++++ klFG++n+++++k + +e+++ ++ss++ e+ a++ G +gvi kl ++++ ++a l++++++ XP_009102841.1 3 DDYEAATKLFGTQNIIRMMKLAAHEQKHLLASSILKEGAAWI----GGGYGVIXKLXWEIKLHEAYLSEIRKK 71 5799*************************************5....8*********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 3.4E-8 | 3 | 69 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MQDDYEAATK LFGTQNIIRM MKLAAHEQKH LLASSILKEG AAWIGGGYGV IXKLXWEIKL 60 HEAYLSEIRK KISEEKNN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009102841.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607622.1 | 3e-37 | PREDICTED: LOB domain-containing protein 5-like | ||||
Swissprot | Q9C8V8 | 7e-20 | LBD5_ARATH; LOB domain-containing protein 5 | ||||
TrEMBL | A0A397YN25 | 9e-40 | A0A397YN25_BRACM; Uncharacterized protein | ||||
STRING | Bo9g027690.1 | 5e-34 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12282 | 14 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G36000.1 | 3e-22 | LOB domain-containing protein 5 |