PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102741.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 308aa    MW: 34778.7 Da    PI: 7.1768
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.81.2e-1222531546
                    HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46
                     R ++ilKKA ELS+LCd +++vi +  +g+l
  XP_009102741.1 22 LREKTILKKALELSILCDNDICVIHYDREGNL 53
                    599***********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0098659IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-131894IPR002100Transcription factor, MADS-box
PfamPF003192.9E-72353IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.3352353IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKSNNKLSVR NQIRFKKSFL LLREKTILKK ALELSILCDN DICVIHYDRE GNLVNAYPED  60
QSQVKDILER YNNLSDTEKI KKNTNLSQFY NKKLVDEKRR SLTDAEERKR FTKKVGEFKG  120
SLLDQLLVLQ DRARYLLYSQ DHQTKPDQSR CLAAMSEQNH NFSAPSSGFF PHNDFSSSLI  180
DEEDPLMSFC PPVINNPVSD HPQQIGSSLT NLLMSGDASG SSNDRSKFSM FLFNHETATF  240
TQLPNSVSSS FDQGLTPCSN NLITASHGAQ DYNFGYGNSH SSQGFNFGCS NNLNTQGFNF  300
GCNNNLCT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102741.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102741.10.0PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLM4DF570.0M4DF57_BRARP; Uncharacterized protein
STRINGBra015129.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.11e-38AGAMOUS-like 53