PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102424.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 380aa    MW: 43373.9 Da    PI: 3.9032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.48.7e-13221454127
             NAM   4 GfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +rF+P+  e++   Lk+ +++++     +++ ++ +  d ++++ w+  +  + +e++ w+f +++++++ +++  +r  + g+Wka g+++++
  XP_009102424.1  22 YVRFSPKSPEVI-LLLKRFIRKEQmptcaVQFRSHADLQDTVSSNGWSAAAyPYFEEDEYWFFLHRKQQATDKKNVDRRLGDLGTWKARGRSTNI 115
                     58**********.789999999995544333323344448888899999742333455566777777777777777777999************* PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     +  + +lvg+k+   + kg+    +kt W+  ey+
  XP_009102424.1 116 YI-GAQLVGIKQKYELMKGK----VKTGWFQFEYT 145
                     **.99********9999554....57899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-1213151IPR003441NAC domain
PROSITE profilePS5100514.53719162IPR003441NAC domain
PfamPF023655.6E-722145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAAPNPANMA AAPNPPLVLP DYVRFSPKSP EVILLLKRFI RKEQMPTCAV QFRSHADLQD  60
TVSSNGWSAA AYPYFEEDEY WFFLHRKQQA TDKKNVDRRL GDLGTWKARG RSTNIYIGAQ  120
LVGIKQKYEL MKGKVKTGWF QFEYTRFSNK FDKICVAHLI FVKKPEVDYP SDISEEEEEE  180
EEEEEEQEQE QEQEQEEEEE EEEESADEEE QGLQVQAPEV ELVNEQQGLH EQVLNLEEEE  240
AAASDEVEQT LANEQQRLQQ VQSHEVELGN EHQGLQEQVV NFAHEEALPL VNGQQGHSLD  300
DDDDEDWARF LNTDDDGLAI DDLFEDGDSE KTLGHVNEQQ SLQDQVLNLE EEAAAAADDE  360
EEQTRVNEVE QQGGVAGTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102424.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102422.10.0PREDICTED: involucrin-like isoform X1
RefseqXP_009102424.10.0PREDICTED: involucrin-like isoform X1
RefseqXP_018508843.10.0PREDICTED: involucrin-like isoform X1
RefseqXP_018508844.10.0PREDICTED: involucrin-like isoform X1
RefseqXP_018508845.10.0PREDICTED: involucrin-like isoform X1
RefseqXP_018508846.10.0PREDICTED: involucrin-like isoform X1
RefseqXP_018508847.10.0PREDICTED: involucrin-like isoform X1
RefseqXP_018508848.10.0PREDICTED: involucrin-like isoform X1
RefseqXP_018508849.10.0PREDICTED: involucrin-like isoform X1
TrEMBLM4DF360.0M4DF36_BRARP; Uncharacterized protein
STRINGBra015108.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.16e-08NAC-like, activated by AP3/PI