PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101914.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 178aa    MW: 20083.8 Da    PI: 6.7693
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.13.5e-3941031100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC++ Cv+apyfp ++++++a++hk+FGas+v k+l++l++++r+da++slvyeA+  + dPv+G+ +++ +lq+ql+ l+ +l+
  XP_009101914.1   4 PCAACKYLRRKCTQACVFAPYFPPNKQEDYAAIHKVFGASQVAKILNDLHPSQRQDAVTSLVYEAQTLLLDPVHGCSRHVYNLQNQLQDLQDQLQ 98 
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                      +++e
  XP_009101914.1  99 IARNE 103
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.2743104IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-394101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSMPCAACKY LRRKCTQACV FAPYFPPNKQ EDYAAIHKVF GASQVAKILN DLHPSQRQDA  60
VTSLVYEAQT LLLDPVHGCS RHVYNLQNQL QDLQDQLQIA RNELVSYNNI IPSLDLPPPI  120
TYQQNHQNPM LMPVVSNYGG PLTSEQLREE AHRVESERSA QVPQMQPNAA PSKRDDCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3821079114LOB family transfactor Ramosa2.1
5ly0_B5e-3821079114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513168.11e-130PREDICTED: LOB domain-containing protein 28
SwissprotQ9SCS41e-55LBD28_ARATH; LOB domain-containing protein 28
TrEMBLM4EMJ31e-128M4EMJ3_BRARP; Uncharacterized protein
STRINGBra030013.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50510.14e-50LOB domain-containing protein 28