PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101727.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 378aa    MW: 41333.9 Da    PI: 7.7455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101727.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07103126326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      e C+ f+ +G C++Gd C FaHg
  XP_009101727.1 103 GEVCPEFRHGGDCSRGDECGFAHG 126
                     589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-599130IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.732101128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5103128IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5104126IPR000571Zinc finger, CCCH-type
SMARTSM003564.3136159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDIEHHNSGH IGKPTVVIPS RKLLSSAKSP SSTSSPRRDG NDQKDYHYDS DSDDPYAGDH  60
FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRYH YTGEVCPEFR HGGDCSRGDE  120
CGFAHGVFEC WLHPSRYRTE ACKDGKHCTR KICFFAHSPP QLRVPPPPES LVSGGGGSAL  180
SSPASVLSNK SNGCCVFCSN SPTSPLFGLA HSPSSSPPLS PANKVTAVSR LSRHRSAVTY  240
KEVLNEMINS LDSFSLTQPL TAASSASMVT MPVSTASMLA SSSLSNHYHH RLPPWLDVGD  300
RDLQFALSPS STPSYLNGQI QLQPPPPSFF SEEFTPRGGR VSDFTAAATA AAEARDKSSF  360
EIGSSGDLDL GWVNDLLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101727.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101727.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW21e-174C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLM4EY400.0M4EY40_BRARP; Uncharacterized protein
STRINGBra033731.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-141C3H family protein