PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009101673.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 377aa MW: 42768.4 Da PI: 7.118

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009101673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.1e-11	286	332	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er RR+++N++f Lr ++P+ + ++Ka+ Le +v+YI++L XP_009101673.1 286 MNHVEAERLRREKLNQRFYALRAVVPNI-----TGMDKASLLEDTVRYINEL 332 589**********************6.....47************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.9E-50	27	209	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.361	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-15	285	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.35E-12	286	333	No hit	No description
Pfam	PF00010	1.0E-8	287	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-14	287	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-12	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MNLLNADYDL SMVDAFLNSS SPGETTLKER LHAVVKVTHE AWCYAIFWKP SYHDISGEPV 60 LKWGYGVYKG EDETDKTRRR RKTNAEEKLQ RNKVLRELSL TISGVSFPVK DEDDDVELTD 120 MEWFYLVSMT CSFRSGSGLA GKAFATYNPV WITGLDMING SGCSRANQGG DLGLQTIVCI 180 PSDNGVLELG STEQIRENTG FFRKIRFLFN FKGYGAMNSS KPRPVYPPIQ NNIIFSTATS 240 STSTTVRSSF AEDIKLEESD HSNIDVKAKL KRKRQKKPTH GREEPMNHVE AERLRREKLN 300 QRFYALRAVV PNITGMDKAS LLEDTVRYIN ELKLNAENAE SKKDAVQIQL NKLNEEIAEQ 360 NAVLEFVDAG EKQWRMI

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MNLLNADYDL SMVDAFLNSS SPGETTLKER LHAVVKVTHE AWCYAIFWKP SYHDISGEPV  60
LKWGYGVYKG EDETDKTRRR RKTNAEEKLQ RNKVLRELSL TISGVSFPVK DEDDDVELTD  120
MEWFYLVSMT CSFRSGSGLA GKAFATYNPV WITGLDMING SGCSRANQGG DLGLQTIVCI  180
PSDNGVLELG STEQIRENTG FFRKIRFLFN FKGYGAMNSS KPRPVYPPIQ NNIIFSTATS  240
STSTTVRSSF AEDIKLEESD HSNIDVKAKL KRKRQKKPTH GREEPMNHVE AERLRREKLN  300
QRFYALRAVV PNITGMDKAS LLEDTVRYIN ELKLNAENAE SKKDAVQIQL NKLNEEIAEQ  360
NAVLEFVDAG EKQWRMI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	2e-45	24	212	6	195	Transcription factor MYC3
4rqw_B	2e-45	24	212	6	195	Transcription factor MYC3
4rs9_A	2e-45	24	212	6	195	Transcription factor MYC3
4yz6_A	2e-45	24	212	6	195	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	276	LKRKRQKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009101673.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189245	0.0	AC189245.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017K02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101673.1	0.0	PREDICTED: transcription factor bHLH28-like
Swissprot	Q9LUK7	1e-123	BH028_ARATH; Transcription factor bHLH28
TrEMBL	M4E887	0.0	M4E887_BRARP; Uncharacterized protein
STRING	Bra024993.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	1e-115	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]