PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101672.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 271aa    MW: 30504.7 Da    PI: 6.3809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.7e-14101147354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e+Er RR+++N++f  Lr llP+      +K +Ka+iLe +v YI++L
  XP_009101672.1 101 MNHVEAERLRREKLNQRFYALRALLPNV-----TKKEKASILEDTVTYINEL 147
                     689************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.74998147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-15100167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-12101148No hitNo description
PfamPF000103.9E-11102147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14102169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-13104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNLLNSDDAL LMINTLLNSS DLWPLAPANL SQLPLAPTAI NSSSDLWPYV PANFGQIQYE  60
ESNISASAVK LEDSAHFNID AKTTPEKKRG RRPTHGREEP MNHVEAERLR REKLNQRFYA  120
LRALLPNVTK KEKASILEDT VTYINELKLN AENAETEKNA IENQLNELKE KIAGRRNGSS  180
SVCSGGEKTP EIEVKIDVKV MDRDALIRLE SSKNNHPGAR LMNAFMDLEV EVNHASISVM  240
NDLMIQQVTV KMGSRVYKQE QLRDLLLSKI N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-2996175281Transcription factor MYC2
5gnj_B5e-2996175281Transcription factor MYC2
5gnj_E5e-2996175281Transcription factor MYC2
5gnj_F5e-2996175281Transcription factor MYC2
5gnj_G5e-2996175281Transcription factor MYC2
5gnj_I5e-2996175281Transcription factor MYC2
5gnj_M5e-2996175281Transcription factor MYC2
5gnj_N5e-2996175281Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18592EKKRGRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101672.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892450.0AC189245.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101672.10.0PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK72e-78BH028_ARATH; Transcription factor bHLH28
TrEMBLM4E8860.0M4E886_BRARP; Uncharacterized protein
STRINGBra024992.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2031456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.17e-81NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  5. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]