PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy18g01330
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 268aa    MW: 31624 Da    PI: 8.7253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy18g01330genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.28.6e-087698123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ Cg++++++s+L +H+r H
  Bathy18g01330 76 HECGVCGRMCTTPSLLATHMRIH 98
                   78*******************99 PP
2zf-C2H226.31.8e-08104126123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fsr ++L+ H+r H
  Bathy18g01330 104 YECDVCEKRFSRADSLRDHMRIH 126
                    99*******************99 PP
3zf-C2H225.53.2e-08132154123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F++  +L++H+r H
  Bathy18g01330 132 YECDVCDKAFRQYGHLQTHMRIH 154
                    99*******************99 PP
4zf-C2H224.47.4e-08160182123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+ + +L++H+r H
  Bathy18g01330 160 YECDVCEKRFRESGTLQSHMRIH 182
                    99*******************99 PP
5zf-C2H227.48.1e-09188210123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++s+L++H+r H
  Bathy18g01330 188 YECDVCEKRFRQSSDLRSHMRIH 210
                    99*******************99 PP
6zf-C2H221.75.3e-07216238123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++  Lk H r H
  Bathy18g01330 216 YECDVCDKAFRHSNALKIHKRIH 238
                    99*******************99 PP
7zf-C2H224.56.9e-08244267123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y C  C k+Fsr+++Lk+H r+ H
  Bathy18g01330 244 YACAVCEKRFSRSESLKKHTRRwH 267
                    89*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00437698IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-1376105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.46476103IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-1776126No hitNo description
PfamPF000961.7E-57698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM003552.7E-5104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.436104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-18106133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.54E-24113169No hitNo description
PfamPF134652.2E-10118142IPR007087Zinc finger, C2H2
SMARTSM003552.7E-5132154IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.456132159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-17134153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-17154179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.5E-4160182IPR015880Zinc finger, C2H2-like
PfamPF138943.8E-4160182No hitNo description
PROSITE profilePS5015716.061160187IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-24169225No hitNo description
Gene3DG3DSA:3.30.160.606.7E-20180207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.6E-5188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.747188215IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
PfamPF134658.9E-11202227IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-18208236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-19210262No hitNo description
PROSITE profilePS5015716.29216243IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4216238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-14237264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.033244264No hitNo description
SMARTSM003551.1244267IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.196244267IPR007087Zinc finger, C2H2
PROSITE patternPS000280246267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGGRRKNPHP KRAENARTVL KEEKEEPKVL CLKIPPPVVD DDDDEVVGEV EIQDEIIRKE  60
MTTATKKAAK RKRGQHECGV CGRMCTTPSL LATHMRIHTN EKPYECDVCE KRFSRADSLR  120
DHMRIHTNEK PYECDVCDKA FRQYGHLQTH MRIHTNERPY ECDVCEKRFR ESGTLQSHMR  180
IHTNEKPYEC DVCEKRFRQS SDLRSHMRIH TNEKPYECDV CDKAFRHSNA LKIHKRIHTN  240
EKPYACAVCE KRFSRSESLK KHTRRWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-527626415188Aart
2i13_B2e-527626415188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822610.0FO082261.1 Bathycoccus prasinos genomic : Chromosome_18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508216.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotA6NK538e-66ZN233_HUMAN; Zinc finger protein 233
TrEMBLK8ER240.0K8ER24_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007508216.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-13C2H2 family protein