PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy18g01250
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family Nin-like
Protein Properties Length: 469aa    MW: 52811.7 Da    PI: 7.0266
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy18g01250genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK52.68.7e-174392352
         RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                   k+i+l+dl k    +  +AAk+ g ++T  K iCR++GI RWPhRk++sl
  Bathy18g01250 43 KNITLNDLTKLALDSESEAAKKFGCGTTRFKTICRKFGIIRWPHRKLHSL 92
                   89*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.66328113IPR003035RWP-RK domain
PfamPF020428.2E-154492IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MTTKGILMSE KKEKTAKSHL RDVENNNNNN KDDEDDKEDS LMKNITLNDL TKLALDSESE  60
AAKKFGCGTT RFKTICRKFG IIRWPHRKLH SLLEMYKSLA GYYQELCEKA TADPENESTM  120
EVLQSTKKDL DRLREYAFQV AYLSIKLRQK ERNVFLLNEY HHSKPKKAKP WPEDILRIRA  180
TIYKQRHVHS KHIKRKSKNS SSASQNLLEE EKEMAPTANP CSMTTSMTTT NNMSANNDTT  240
CNTTTYSSEE SVEMSGADTA FNHHQMVDVS CGTRTLTSDA ETNTYLNNSY AFINNEMSSG  300
YIENEDDHCD DEDQYQTHRG HPSLPPSFKN TNTKTKMMYT TTSAANSEYS SGYGVDFFNV  360
TAPTFINNNN NENGQNSVGG RKRKKPTSSL SAALSKLSKR AAANNNFKKG GETEEEQPTA  420
LAFSMPHMLN MDAIFGIDGS VERDDEDTAL SPNSYGITVA SFKETKRM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380384RKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822610.0FO082261.1 Bathycoccus prasinos genomic : Chromosome_18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508248.10.0predicted protein
TrEMBLK8ES040.0K8ES04_9CHLO; Uncharacterized protein
STRINGXP_007508248.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP943444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-08RWP-RK domain-containing protein