PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy17g01170
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 268aa    MW: 31717.1 Da    PI: 9.8776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy17g01170genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.5e-06132154123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F  +s+L rH+ tH
  Bathy17g01170 132 HECDVCEKVFGYPSHLARHMHTH 154
                    78*******************99 PP
2zf-C2H2254.7e-08160182123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fs++ nLkrH r H
  Bathy17g01170 160 YECDVCEKCFSDSGNLKRHKRIH 182
                    99*******************99 PP
3zf-C2H226.31.8e-08188210123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F++  +L+ H+r H
  Bathy17g01170 188 YECDVCDKAFRQATHLEIHMRIH 210
                    99*******************99 PP
4zf-C2H225.92.5e-08216238123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++s+LkrH r H
  Bathy17g01170 216 YECDVCEKRFTQSSSLKRHVRIH 238
                    99*******************99 PP
5zf-C2H222.33.4e-07244267123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C+ C ++F+r+++Lk H+r+ H
  Bathy17g01170 244 YECHVCEMRFRRSDHLKYHMRRyH 267
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.33E-17131182No hitNo description
PROSITE profilePS5015714.586132159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-13132161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0089132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
PfamPF000969.5E-6160182IPR007087Zinc finger, C2H2
SMARTSM003552.5E-4160182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.313160187IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-16162189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-22169225No hitNo description
PfamPF000961.7E-6188210IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.602188215IPR007087Zinc finger, C2H2
SMARTSM003556.5E-5188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-16190209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.6E-19210235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-19210262No hitNo description
PROSITE profilePS5015716.934216243IPR007087Zinc finger, C2H2
PfamPF000964.6E-6216238IPR007087Zinc finger, C2H2
SMARTSM003559.2E-5216238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-13236264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.697244267IPR007087Zinc finger, C2H2
SMARTSM003550.013244267IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSSRRKNPHP KRAVNARTVL KVKEEQPPVL CSRIPDEDDD LEANHHQIQK EETTFIENKR  60
GRLSREAGLP EDSDRELSPP PPEGKTRKSK RIVEKIQKGI IYDKYKHLRS PILSPGRRRN  120
NGKKGVKRKR GHECDVCEKV FGYPSHLARH MHTHTNEKPY ECDVCEKCFS DSGNLKRHKR  180
IHTNEKAYEC DVCDKAFRQA THLEIHMRIH TNEKPYECDV CEKRFTQSSS LKRHVRIHTN  240
EKPYECHVCE MRFRRSDHLK YHMRRYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-371092644188Aart
2i13_B3e-371092644188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822620.0FO082262.1 Bathycoccus prasinos genomic : Chromosome_17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508389.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP100736e-43ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22
TrEMBLK8FDH80.0K8FDH8_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007508389.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-13C2H2 family protein