PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy17g01100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 263aa MW: 31236.3 Da PI: 7.9304 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 24.2 | 8.2e-08 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F ++ +L rH+rtH Bathy17g01100 97 HECDVCEKVFGSQADLARHMRTH 119 78********************9 PP | |||||||
2 | zf-C2H2 | 27.6 | 6.9e-09 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ksF++ snLkrH r H Bathy17g01100 125 YECDVCEKSFTQASNLKRHKRIH 147 99*******************99 PP | |||||||
3 | zf-C2H2 | 26.1 | 2.1e-08 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ +Lk+H+r H Bathy17g01100 153 YECDVCEKRFRDSGDLKVHMRIH 175 99*******************99 PP | |||||||
4 | zf-C2H2 | 28.1 | 4.7e-09 | 181 | 203 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++ +L++H+r H Bathy17g01100 181 YECDVCDKAFRQSGHLQSHMRIH 203 99*******************99 PP | |||||||
5 | zf-C2H2 | 28.4 | 4e-09 | 209 | 231 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++snLk+H+r H Bathy17g01100 209 YECDVCEKCFRDSSNLKKHMRIH 231 99*******************99 PP | |||||||
6 | zf-C2H2 | 21.2 | 7.6e-07 | 237 | 259 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+ + +LkrH rtH Bathy17g01100 237 YECDVCDKAFRYSQHLKRHKRTH 259 99********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.42E-19 | 96 | 147 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.7E-15 | 97 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 15.293 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.9E-5 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13465 | 1.6E-10 | 111 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.685 | 125 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.1E-5 | 125 | 147 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.2E-18 | 127 | 154 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 127 | 147 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.48E-24 | 133 | 190 | No hit | No description |
Pfam | PF00096 | 2.6E-6 | 153 | 175 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 15.687 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.9E-5 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-18 | 155 | 181 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.727 | 181 | 208 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 4.8E-7 | 181 | 203 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.0E-5 | 181 | 203 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-16 | 182 | 200 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 183 | 203 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-18 | 201 | 228 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.96E-21 | 203 | 255 | No hit | No description |
PROSITE profile | PS50157 | 16.768 | 209 | 236 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.4E-5 | 209 | 231 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 211 | 231 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13465 | 5.3E-11 | 223 | 247 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.7E-16 | 229 | 259 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.11 | 237 | 262 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0012 | 237 | 259 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 239 | 259 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MSRRKNPHPK RAVNARTVLK GEKEEPLVLC SKIPDEDDDF EGNHHQIQKE EEEDDDVEQL 60 RRIMCVPRDD VVTEQNQMRK EEETTFIAKG VKRKRGHECD VCEKVFGSQA DLARHMRTHT 120 NEKPYECDVC EKSFTQASNL KRHKRIHMNE KPYECDVCEK RFRDSGDLKV HMRIHTKEKP 180 YECDVCDKAF RQSGHLQSHM RIHTNERPYE CDVCEKCFRD SSNLKKHMRI HTNEKPYECD 240 VCDKAFRYSQ HLKRHKRTHC AL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 6e-50 | 97 | 259 | 22 | 188 | Aart |
2i13_B | 6e-50 | 97 | 259 | 22 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082262 | 0.0 | FO082262.1 Bathycoccus prasinos genomic : Chromosome_17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007508340.1 | 0.0 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | P17036 | 1e-57 | ZNF3_HUMAN; Zinc finger protein 3 | ||||
TrEMBL | K8ER90 | 0.0 | K8ER90_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007508340.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 4e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19011068 |