PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy17g00740
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 324aa    MW: 38542.9 Da    PI: 9.0876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy17g00740genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.76e-087698123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C  C k+F ++s L rH+r H
  Bathy17g00740 76 HECDVCEKVFVTPSKLARHMRIH 98
                   78*******************99 PP
2zf-C2H221.56e-07104126123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC  C k+F+ + +Lk+H r H
  Bathy17g00740 104 YKCDVCEKRFRESGTLKVHVRIH 126
                    9********************99 PP
3zf-C2H219.82.1e-06132154123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C ++F+++ +L+ H+r H
  Bathy17g00740 132 YECDVCEQRFTQSCSLQIHMRIH 154
                    99*******************99 PP
4zf-C2H228.24.6e-09160182123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fsr ++L++H+r H
  Bathy17g00740 160 YECDVCEKRFSRADTLQKHMRIH 182
                    99*******************99 PP
5zf-C2H225.72.8e-08188210123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++++L++H+r H
  Bathy17g00740 188 YECDVCEKRFRHSDTLQKHMRIH 210
                    99*******************99 PP
6zf-C2H226.41.7e-08216238123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C + F+++snLk+H+r H
  Bathy17g00740 216 YECDVCEMKFRNSSNLKKHMRIH 238
                    99*******************99 PP
7zf-C2H222.82.4e-07244266123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+ +s LkrH r H
  Bathy17g00740 244 YECDVCEKRFRESSGLKRHVRIH 266
                    99*******************99 PP
8zf-C2H226.71.4e-08272294123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+r s+L+ H+r H
  Bathy17g00740 272 YECDVCEKRFTRASSLRDHMRIH 294
                    99*******************99 PP
9zf-C2H226.31.8e-08300323123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k+F+++ +Lk+H+rt H
  Bathy17g00740 300 YECDVCEKRFTQSGSLKKHMRTqH 323
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-77693IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000964.4E-67698IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-1876126No hitNo description
PROSITE profilePS5015715.18976103IPR007087Zinc finger, C2H2
SMARTSM003551.4E-47698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-1894122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.667104131IPR007087Zinc finger, C2H2
PfamPF138940.001104126No hitNo description
SMARTSM003555.3E-4104126IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576678.54E-22113169No hitNo description
Gene3DG3DSA:3.30.160.601.9E-17123158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.23132159IPR007087Zinc finger, C2H2
SMARTSM003558.0E-4132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-18159189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.9E-6160182IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.56160187IPR007087Zinc finger, C2H2
SMARTSM003552.2E-5160182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-22169225No hitNo description
PfamPF000961.1E-5188210IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.373188215IPR007087Zinc finger, C2H2
SMARTSM003559.7E-5188210IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.0E-17190210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-18211235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.1E-6216238IPR007087Zinc finger, C2H2
SMARTSM003554.7E-5216238IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.999216243IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-24225281No hitNo description
Gene3DG3DSA:3.30.160.602.4E-19236263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138943.5E-4244266No hitNo description
SMARTSM003554.3E-4244266IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.332244271IPR007087Zinc finger, C2H2
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-20264291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.57E-21266318No hitNo description
PROSITE profilePS5015716.54272299IPR007087Zinc finger, C2H2
PfamPF000961.9E-6272294IPR007087Zinc finger, C2H2
SMARTSM003552.7E-5272294IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280274294IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-16292321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.8E-6300323IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.986300323IPR007087Zinc finger, C2H2
SMARTSM003553.8E-5300323IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280302323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSSRRKNKHP KRAENAKTVV VASAAEEEGV GEGEGEEERG PVLLCLRIPD DDEQRNEIRK  60
EKTTATKRGK RKRGQHECDV CEKVFVTPSK LARHMRIHTN ERPYKCDVCE KRFRESGTLK  120
VHVRIHTNEK PYECDVCEQR FTQSCSLQIH MRIHTKEKPY ECDVCEKRFS RADTLQKHMR  180
IHTNEKPYEC DVCEKRFRHS DTLQKHMRIH TNEKPYECDV CEMKFRNSSN LKKHMRIHTN  240
EKPYECDVCE KRFRESSGLK RHVRIHTNEK PYECDVCEKR FTRASSLRDH MRIHTKEKPY  300
ECDVCEKRFT QSGSLKKHMR TQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wjq_D1e-64763209285Zinc finger protein 568
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822620.0FO082262.1 Bathycoccus prasinos genomic : Chromosome_17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508450.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotQ145902e-85ZN235_HUMAN; Zinc finger protein 235
SwissprotQ8N9F85e-86ZN454_HUMAN; Zinc finger protein 454
TrEMBLK8ERI40.0K8ERI4_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007508450.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-14C2H2 family protein