PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy16g02080
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 178aa    MW: 21225.3 Da    PI: 9.0687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy16g02080genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H229.51.8e-097092123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C  Cgk+F r+s+L rH+rtH
  Bathy16g02080 70 HECDVCGKVFDRRSLLDRHMRTH 92
                   78********************9 PP
2zf-C2H227.95.8e-0998120123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++s+Lk+H+r H
  Bathy16g02080  98 YECDVCEKRFTQSSSLKTHMRIH 120
                    99*******************99 PP
3zf-C2H225.82.6e-08126148123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C++ F++  +L++H+r H
  Bathy16g02080 126 YECDVCDEAFRQLGHLQSHMRIH 148
                    99*******************99 PP
4zf-C2H215.64.7e-05154174121
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                    y+C  C + F+++ +Lk+H+r
  Bathy16g02080 154 YECDVCEMKFRQSGTLKKHMR 174
                    99******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-166999IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.297097IPR007087Zinc finger, C2H2
SMARTSM003559.8E-57092IPR015880Zinc finger, C2H2-like
PfamPF000968.1E-77092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-2478135No hitNo description
PROSITE profilePS5015716.70698125IPR007087Zinc finger, C2H2
SMARTSM003555.9E-598120IPR015880Zinc finger, C2H2-like
PfamPF000968.9E-798120IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-19100120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.62E-19120172No hitNo description
Gene3DG3DSA:3.30.160.604.8E-17121146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.583126153IPR007087Zinc finger, C2H2
SMARTSM003557.3E-5126148IPR015880Zinc finger, C2H2-like
PfamPF000962.4E-6126148IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-13147174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.739154177IPR007087Zinc finger, C2H2
PfamPF128740.012154174No hitNo description
SMARTSM003550.0088154177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSRRRKNPHP KRAVNARTVL KVREKDEPNL VLCLKIPDEE EDDLEANHHQ IQKEETTFNK  60
KGAKRKRTQH ECDVCGKVFD RRSLLDRHMR THTNERPYEC DVCEKRFTQS SSLKTHMRIH  120
TKEKPYECDV CDEAFRQLGH LQSHMRIHTK EKPYECDVCE MKFRQSGTLK KHMRCCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-297017418188Aart
2i13_B1e-297017418188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822630.0FO082263.1 Bathycoccus prasinos genomic : Chromosome_16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508705.11e-128PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP394133e-34AEF1_DROME; Adult enhancer factor 1
TrEMBLK8EPY71e-127K8EPY7_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007508705.11e-128(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.23e-13C2H2 family protein