PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy16g01810

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

C2H2

Protein Properties

Length: 273aa MW: 32581.9 Da PI: 9.1267

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy16g01810	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20	1.8e-06	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F + s+L +H r H Bathy16g01810 81 HECGVCEKVFVSASQLATHVRIH 103 78*******************99 PP
2	zf-C2H2	23.7	1.2e-07	109	131	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++s+L rH rtH Bathy16g01810 109 YECDVCEKCFRDSSTLIRHKRTH 131 99********************9 PP
3	zf-C2H2	20.5	1.3e-06	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ +L++H r H Bathy16g01810 137 YECDVCEKRFRHSNTLQSHKRIH 159 99*******************99 PP
4	zf-C2H2	20.6	1.2e-06	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C +F++ +L++H+r H Bathy16g01810 165 YKCVVCEARFNQLGSLQSHMRIH 187 9********************99 PP
5	zf-C2H2	17.5	1.2e-05	193	215	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ Lk H r H Bathy16g01810 193 YECDVCEKRFRHSNGLKYHKRIH 215 99*******************99 PP
6	zf-C2H2	26.6	1.4e-08	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++s+L++H+r H Bathy16g01810 221 YECVVCEKRFTQSSHLTNHMRIH 243 99*******************99 PP
7	zf-C2H2	19.3	3.1e-06	249	272	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C k++++ +Lk H+rt H Bathy16g01810 249 YECDVCEKRYRHANTLKYHMRTqH 272 99********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.31E-17	80	131	No hit	No description
PROSITE profile	PS50157	14.648	81	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0023	81	103	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.6E-14	81	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	0.0078	82	102	No hit	No description
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0013	109	131	IPR015880	Zinc finger, C2H2-like
Pfam	PF00096	2.4E-5	109	131	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	16.103	109	136	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	111	131	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.6E-17	111	138	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.31E-20	118	174	No hit	No description
SMART	SM00355	0.0018	137	159	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	9.5E-4	137	158	No hit	No description
PROSITE profile	PS50157	16.165	137	164	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.9E-15	139	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.2E-4	165	187	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	0.0061	165	186	No hit	No description
PROSITE profile	PS50157	14.316	165	192	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.2E-16	167	194	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	167	187	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.15E-21	174	230	No hit	No description
SMART	SM00355	0.0029	193	215	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	15.646	193	220	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.024	193	216	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	195	215	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.0E-15	195	219	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.45E-19	215	267	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-16	220	240	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	9.6E-4	221	243	IPR015880	Zinc finger, C2H2-like
Pfam	PF00096	2.3E-6	221	243	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	16.56	221	248	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	223	243	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-14	241	270	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0018	249	272	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	0.015	249	269	No hit	No description
PROSITE profile	PS50157	11.468	249	272	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	251	272	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MREKNPRPER AECAKTKVVR SVTREEREGE ARPVLGLFCL RIPDDDDDDD DDEIEAQNET 60 RKEKTTEKTK RGGKRKRKQR HECGVCEKVF VSASQLATHV RIHTNEKPYE CDVCEKCFRD 120 SSTLIRHKRT HTKEKPYECD VCEKRFRHSN TLQSHKRIHT NEKPYKCVVC EARFNQLGSL 180 QSHMRIHTKE KPYECDVCEK RFRHSNGLKY HKRIHTKEKP YECVVCEKRF TQSSHLTNHM 240 RIHTNEKPYE CDVCEKRYRH ANTLKYHMRT QH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2i13_A	4e-48	81	270	4	188	Aart
2i13_B	4e-48	81	270	4	188	Aart
5wjq_D	2e-47	80	270	5	285	Zinc finger protein 568
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082263	0.0	FO082263.1 Bathycoccus prasinos genomic : Chromosome_16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007508535.1	0.0	PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
Swissprot	P17036	4e-63	ZNF3_HUMAN; Zinc finger protein 3
TrEMBL	K8EPF8	0.0	K8EPF8_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRING	XP_007508535.1	0.0	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP70	6	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	2e-14	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	19011309