PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy15g02320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 28984.7 Da PI: 8.1057 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 24.8 | 5.6e-08 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F r+s+L H+r H Bathy15g02320 80 HECDVCEKVFDRPSSLAIHMRIH 102 78*******************99 PP | |||||||
2 | zf-C2H2 | 21.4 | 6.7e-07 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ++F+++s+L++H r H Bathy15g02320 108 YECDVCEMRFRHSSTLRVHERIH 130 99*******************99 PP | |||||||
3 | zf-C2H2 | 24.2 | 8.2e-08 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C+k F+ + Lk H+r H Bathy15g02320 136 YECDICDKAFRESGKLKEHMRIH 158 99*******************99 PP | |||||||
4 | zf-C2H2 | 27.9 | 5.6e-09 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fsr+ +L++H+r H Bathy15g02320 164 YECDVCEKRFSRSGTLQSHMRIH 186 99*******************99 PP | |||||||
5 | zf-C2H2 | 25.6 | 3.1e-08 | 192 | 214 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++s+Lk+H r H Bathy15g02320 192 YECDVCEKRFRTSSQLKVHVRIH 214 99*******************99 PP | |||||||
6 | zf-C2H2 | 23.8 | 1.1e-07 | 220 | 242 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ nLk+H+rtH Bathy15g02320 220 YECDVCEKRFTQSCNLKTHMRTH 242 99********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-16 | 79 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 15.147 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.8E-4 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 6.1E-6 | 80 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.8E-24 | 88 | 145 | No hit | No description |
PROSITE profile | PS50157 | 15.417 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.013 | 108 | 130 | No hit | No description |
SMART | SM00355 | 0.0053 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.4E-16 | 110 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 6.3E-5 | 136 | 158 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.7E-5 | 136 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.456 | 136 | 163 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-15 | 137 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.29E-23 | 144 | 201 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-20 | 156 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 16.415 | 164 | 191 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.1E-5 | 164 | 186 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 2.3E-6 | 164 | 186 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 166 | 186 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-18 | 184 | 210 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.02E-19 | 186 | 238 | No hit | No description |
PROSITE profile | PS50157 | 14.835 | 192 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.4E-4 | 192 | 214 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 4.8E-6 | 192 | 214 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 194 | 214 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-17 | 211 | 242 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.193 | 220 | 243 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.0E-4 | 220 | 242 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.3E-5 | 220 | 242 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 222 | 242 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSSRRKNPHP KRAENARTVL KGEKEERPVL LCVRIPDDDD EDDDEEDVAF DEVVEQQNEK 60 LRKEKTATKR GGKRKRGQQH ECDVCEKVFD RPSSLAIHMR IHTNEKPYEC DVCEMRFRHS 120 STLRVHERIH TNEKPYECDI CDKAFRESGK LKEHMRIHTN EKPYECDVCE KRFSRSGTLQ 180 SHMRIHTNEK PYECDVCEKR FRTSSQLKVH VRIHTNEKAY ECDVCEKRFT QSCNLKTHMR 240 THR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-44 | 80 | 242 | 4 | 188 | Aart |
2i13_B | 1e-44 | 80 | 242 | 4 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082264 | 0.0 | FO082264.1 Bathycoccus prasinos genomic : Chromosome_15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007508772.1 | 1e-179 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | A6NK53 | 7e-55 | ZN233_HUMAN; Zinc finger protein 233 | ||||
Swissprot | P24399 | 4e-55 | ZN239_MOUSE; Zinc finger protein 239 | ||||
TrEMBL | K8FCU3 | 1e-177 | K8FCU3_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007508772.1 | 1e-178 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 1e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19011527 |