PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy15g01170

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

C2H2

Protein Properties

Length: 271aa MW: 32238.7 Da PI: 8.6699

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy15g01170	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.4	1.3e-06	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F ++s L +H+r H Bathy15g01170 78 HECDVCEKVFLSPSKLAVHMRIH 100 78*******************99 PP
2	zf-C2H2	24.6	6.2e-08	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+ + +Lk+H+r H Bathy15g01170 106 YECDVCEKRFRESGDLKVHMRIH 128 99*******************99 PP
3	zf-C2H2	21.3	7.1e-07	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ++F+++ +Lk H r H Bathy15g01170 134 YECDVCERRFTQSQHLKAHKRIH 156 99*******************99 PP
4	zf-C2H2	28.1	5e-09	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++ +Lk+H+r H Bathy15g01170 162 YECDVCDKAFRDSGDLKKHMRIH 184 99*******************99 PP
5	zf-C2H2	26.1	2.2e-08	190	212	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ++F+++s+Lk+H+r H Bathy15g01170 190 YECDVCERRFTQSSSLKTHMRIH 212 99*******************99 PP
6	zf-C2H2	26.7	1.4e-08	218	240	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++s+Lk+H+r H Bathy15g01170 218 YECDVCEKCFRDSSSLKKHMRIH 240 99*******************99 PP
7	zf-C2H2	24.9	5.1e-08	246	268	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+r+++Lk H+rtH Bathy15g01170 246 YECDVCQKRFRRSDHLKGHMRTH 268 99********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	8.5E-4	78	100	IPR015880	Zinc finger, C2H2-like
Pfam	PF13894	8.9E-4	78	100	No hit	No description
SuperFamily	SSF57667	7.58E-19	78	128	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.0E-15	78	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	14.69	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	15.999	106	133	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.3E-4	106	128	IPR015880	Zinc finger, C2H2-like
Pfam	PF00096	1.7E-5	106	128	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-15	107	125	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.5E-23	115	171	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.5E-19	126	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	16.29	134	161	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0038	134	156	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	0.0038	134	155	No hit	No description
PROSITE pattern	PS00028	0	136	156	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.7E-18	154	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	16.436	162	189	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.3E-5	162	184	IPR015880	Zinc finger, C2H2-like
Pfam	PF00096	3.8E-7	162	184	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	164	184	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.0E-24	170	227	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.2E-20	182	209	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	1.0E-4	190	212	IPR015880	Zinc finger, C2H2-like
Pfam	PF00096	2.7E-6	190	212	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	16.747	190	217	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	192	212	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-18	210	237	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.71E-20	212	264	No hit	No description
SMART	SM00355	8.4E-5	218	240	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	16.664	218	245	IPR007087	Zinc finger, C2H2
Pfam	PF00096	1.2E-6	218	240	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	220	240	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.6E-18	238	269	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	2.4E-4	246	268	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.757	246	270	IPR007087	Zinc finger, C2H2
Pfam	PF00096	6.9E-6	246	268	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	248	270	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MTNSRRKNKH PKRAENVKTV VVASGEKREE EGEEDEDVER LRRMLMCVPC DDGVEQNQMR 60 KEETAILAKG VKRKRGQHEC DVCEKVFLSP SKLAVHMRIH TNEKPYECDV CEKRFRESGD 120 LKVHMRIHTN EKPYECDVCE RRFTQSQHLK AHKRIHTNEK PYECDVCDKA FRDSGDLKKH 180 MRIHTKEKPY ECDVCERRFT QSSSLKTHMR IHTNEKPYEC DVCEKCFRDS SSLKKHMRIH 240 TNEKPYECDV CQKRFRRSDH LKGHMRTHQH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2i13_A	9e-51	65	268	4	188	Aart
2i13_B	9e-51	65	268	4	188	Aart
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082264	0.0	FO082264.1 Bathycoccus prasinos genomic : Chromosome_15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007508973.1	0.0	PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
Swissprot	A6NK53	9e-68	ZN233_HUMAN; Zinc finger protein 233
TrEMBL	K8EQ48	0.0	K8EQ48_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRING	XP_007508973.1	0.0	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP70	6	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	1e-12	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	19011457