PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy13g01410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 30148 Da PI: 4.7569 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 26.8 | 1.2e-08 | 115 | 137 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk+F +s+L +H+r H Bathy13g01410 115 HECDVCGKMFAKPSHLATHMRIH 137 78*******************99 PP | |||||||
2 | zf-C2H2 | 25.5 | 3.4e-08 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C k+F+++ +Lk H+r H Bathy13g01410 143 YKCDVCEKRFTQSGSLKIHMRIH 165 9********************99 PP | |||||||
3 | zf-C2H2 | 28.5 | 3.6e-09 | 171 | 193 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++ +L++H+r H Bathy13g01410 171 YECDVCDKAFRQPGHLETHMRIH 193 99*******************99 PP | |||||||
4 | zf-C2H2 | 25.7 | 2.8e-08 | 199 | 221 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ nLk+H r H Bathy13g01410 199 YECDVCEKRFTQPGNLKKHKRIH 221 99*******************99 PP | |||||||
5 | zf-C2H2 | 24 | 1e-07 | 227 | 249 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+r++ Lk+H rtH Bathy13g01410 227 YECDVCDKAFRRSDVLKTHKRTH 249 99********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.11E-20 | 114 | 165 | No hit | No description |
Pfam | PF00096 | 2.7E-6 | 115 | 137 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-16 | 115 | 144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 4.0E-4 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.332 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 3.1E-6 | 143 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.0E-5 | 143 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.311 | 143 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-19 | 145 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 145 | 165 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.53E-24 | 152 | 208 | No hit | No description |
Pfam | PF00096 | 3.4E-7 | 171 | 193 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.6E-5 | 171 | 193 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.477 | 171 | 198 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 173 | 193 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.9E-19 | 173 | 200 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.39E-20 | 197 | 249 | No hit | No description |
Pfam | PF00096 | 4.7E-6 | 199 | 221 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.394 | 199 | 226 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2E-4 | 199 | 221 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 201 | 221 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-17 | 201 | 220 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene3D | G3DSA:3.30.160.60 | 3.0E-15 | 221 | 250 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.695 | 227 | 251 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.9E-7 | 227 | 250 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.8E-4 | 227 | 249 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 229 | 251 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MRRRKNPHPK RAVNARTVLK GEKEEKEEPL VLCSRIPDEE DDLEVNHHQI RKEEEEEGEE 60 EEEGEEEEEE EEEEEEGEEE EEEEEEEEEE EEEEEEEEEE EEVTVRKGAK RKRGHECDVC 120 GKMFAKPSHL ATHMRIHTNE KPYKCDVCEK RFTQSGSLKI HMRIHTNEKP YECDVCDKAF 180 RQPGHLETHM RIHTNEKPYE CDVCEKRFTQ PGNLKKHKRI HTNERPYECD VCDKAFRRSD 240 VLKTHKRTHH H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-42 | 115 | 249 | 4 | 188 | Aart |
2i13_B | 1e-42 | 115 | 249 | 4 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082266 | 0.0 | FO082266.1 Bathycoccus prasinos genomic : Chromosome_13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007509393.1 | 1e-174 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | P10073 | 1e-47 | ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22 | ||||
TrEMBL | K8EMB3 | 1e-173 | K8EMB3_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007509393.1 | 1e-174 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 3e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19012093 |