PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy13g00550
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 297aa    MW: 35201.9 Da    PI: 8.3843
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy13g00550genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-067799123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C k+F + s L  H r H
  Bathy13g00550 77 HECGVCEKVFVSASKLAIHVRIH 99
                   78*******************99 PP
2zf-C2H222.72.6e-07105127123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F ++ nLk H+r H
  Bathy13g00550 105 YECDVCEKCFHTSGNLKAHMRIH 127
                    99*******************99 PP
3zf-C2H225.82.7e-08133155123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+++snLkrH r H
  Bathy13g00550 133 FECDVCEKRFRDSSNLKRHKRIH 155
                    89*******************99 PP
4zf-C2H224.85.4e-08161183123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fs++ +L+ H+r H
  Bathy13g00550 161 YECDVCEKRFSQSGHLQYHMRIH 183
                    99*******************99 PP
5zf-C2H226.71.4e-08189211123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k F+++s+Lk+H+r H
  Bathy13g00550 189 YECDVCEKAFRHSSTLKKHMRIH 211
                    99*******************99 PP
6zf-C2H222.72.5e-07217239123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++s+Lk H+r H
  Bathy13g00550 217 YECDVCEKCFRHSSTLKAHMRFH 239
                    99*******************99 PP
7zf-C2H223.71.2e-07245267123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F ++snLk+H+r H
  Bathy13g00550 245 YECDVCEKCFHTSSNLKKHMRIH 267
                    99*******************99 PP
8zf-C2H224.75.9e-08273296123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k+F+++ +LkrH rt H
  Bathy13g00550 273 YECDVCEKRFTQSGHLKRHVRTqH 296
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015714.29577104IPR007087Zinc finger, C2H2
SMARTSM003550.00687799IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-67796IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576678.96E-2285142No hitNo description
Gene3DG3DSA:3.30.160.606.6E-1897124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.627105132IPR007087Zinc finger, C2H2
SMARTSM003552.3E-4105127IPR015880Zinc finger, C2H2-like
PfamPF000961.9E-5105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-18125152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.664133160IPR007087Zinc finger, C2H2
SMARTSM003552.6E-4133155IPR015880Zinc finger, C2H2-like
PfamPF000966.6E-6133155IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-24142198No hitNo description
Gene3DG3DSA:3.30.160.604.3E-19153187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.436161188IPR007087Zinc finger, C2H2
SMARTSM003559.7E-5161183IPR015880Zinc finger, C2H2-like
PfamPF000961.2E-5161183IPR007087Zinc finger, C2H2
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-19188218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.8E-4189211IPR015880Zinc finger, C2H2-like
PfamPF000962.9E-6189211IPR007087Zinc finger, C2H2
PROSITE profilePS5015717.038189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
SuperFamilySSF576674.62E-23197254No hitNo description
PROSITE profilePS5015716.061217244IPR007087Zinc finger, C2H2
SMARTSM003550.015217239IPR015880Zinc finger, C2H2-like
PfamPF128740.0098217237No hitNo description
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-16219246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.7E-20239291No hitNo description
SMARTSM003553.3E-4245267IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.581245272IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-18247273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF134652.6E-10259283IPR007087Zinc finger, C2H2
SMARTSM003552.3E-4273296IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.861273296IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-12274294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280275296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGGRRKNPNP KRAENARTVL KSEHVPEKRG GEEEEEEEPD EVLLCVRIPD EDEVNEQMRK  60
EEMTVRKGAK RKRGQQHECG VCEKVFVSAS KLAIHVRIHT NEKPYECDVC EKCFHTSGNL  120
KAHMRIHTNE RSFECDVCEK RFRDSSNLKR HKRIHTNEKP YECDVCEKRF SQSGHLQYHM  180
RIHTNEKPYE CDVCEKAFRH SSTLKKHMRI HTNEKPYECD VCEKCFRHSS TLKAHMRFHT  240
NEKPYECDVC EKCFHTSSNL KKHMRIHTNE KPYECDVCEK RFTQSGHLKR HVRTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3j_E3e-52632943284Zinc finger protein 568
5v3j_F3e-52632943284Zinc finger protein 568
5v3m_C6e-52632943312Zinc finger protein 568
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822660.0FO082266.1 Bathycoccus prasinos genomic : Chromosome_13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509407.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotA6NK534e-74ZN233_HUMAN; Zinc finger protein 233
TrEMBLK8F3040.0K8F304_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007509407.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.23e-16C2H2 family protein