PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy11g03440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 29436.9 Da PI: 7.2424 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 24.1 | 9.1e-08 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ +s+ +rH+rtH Bathy11g03440 82 HECDVCEKVFRYPSDVTRHMRTH 104 78********************9 PP | |||||||
2 | zf-C2H2 | 28.3 | 4.1e-09 | 110 | 132 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs++ nL++H+r H Bathy11g03440 110 YECDVCEKRFSDSGNLTKHMRIH 132 99*******************99 PP | |||||||
3 | zf-C2H2 | 26.5 | 1.6e-08 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs++ +L++H+r H Bathy11g03440 138 YECAVCEKRFSHSGSLQKHMRIH 160 99*******************99 PP | |||||||
4 | zf-C2H2 | 25.5 | 3.3e-08 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs++ +L++H+r H Bathy11g03440 166 YECDVCEKCFSQSGHLQTHMRIH 188 99*******************99 PP | |||||||
5 | zf-C2H2 | 22.2 | 3.7e-07 | 194 | 216 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+ ++ L+rH+r H Bathy11g03440 194 YECDVCEKRFRYSHVLQRHMRIH 216 99*******************99 PP | |||||||
6 | zf-C2H2 | 24.2 | 8.6e-08 | 222 | 245 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C k+F+r+++LkrH rt H Bathy11g03440 222 YECDMCEKRFRRSDTLKRHKRTqH 245 99********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-15 | 82 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 8.1E-6 | 82 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.6E-4 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.898 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.52E-23 | 90 | 147 | No hit | No description |
PROSITE profile | PS50157 | 16.061 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 6.3E-7 | 110 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.7E-5 | 110 | 132 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.6E-17 | 112 | 139 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 8.8E-6 | 138 | 160 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1E-4 | 138 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.415 | 138 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.3E-18 | 140 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 140 | 160 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.45E-24 | 147 | 203 | No hit | No description |
Pfam | PF00096 | 5.3E-6 | 166 | 188 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.1E-4 | 166 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.498 | 166 | 193 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 168 | 188 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.9E-18 | 168 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.66E-20 | 188 | 240 | No hit | No description |
Pfam | PF13894 | 0.0011 | 194 | 216 | No hit | No description |
SMART | SM00355 | 7.0E-4 | 194 | 216 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.895 | 194 | 221 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-16 | 196 | 215 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 196 | 216 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.1E-15 | 216 | 243 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.902 | 222 | 245 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 3.3E-4 | 222 | 245 | No hit | No description |
SMART | SM00355 | 9.5E-4 | 222 | 245 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 224 | 245 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MRRKNPHPQR AVNAGTVLRV VKGRREEEGE EEGEEPVLCL RIPDEDDFEA NHQIQKEDEE 60 EGEEEEEEEI TVRKGTKRKR GHECDVCEKV FRYPSDVTRH MRTHTNEKPY ECDVCEKRFS 120 DSGNLTKHMR IHANEKPYEC AVCEKRFSHS GSLQKHMRIH TNEKPYECDV CEKCFSQSGH 180 LQTHMRIHTN EKPYECDVCE KRFRYSHVLQ RHMRIHTNEK PYECDMCEKR FRRSDTLKRH 240 KRTQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 3e-49 | 82 | 243 | 4 | 188 | Aart |
2i13_B | 3e-49 | 82 | 243 | 4 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082268 | 0.0 | FO082268.1 Bathycoccus prasinos genomic : Chromosome_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007510142.1 | 1e-180 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
TrEMBL | K8EJW3 | 1e-178 | K8EJW3_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007510142.1 | 1e-179 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 3e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19013023 |